Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHH79_RS13005 Genome accession   NZ_CP150275
Coordinates   2500894..2501661 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2495894..2506661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS12985 (MHH79_12985) - 2496068..2496880 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  MHH79_RS12990 (MHH79_12990) ccpN 2496906..2497544 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  MHH79_RS12995 (MHH79_12995) glyS 2497677..2499716 (-) 2040 WP_340034591.1 glycine--tRNA ligase subunit beta -
  MHH79_RS13000 (MHH79_13000) glyQ 2499709..2500596 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  MHH79_RS13005 (MHH79_13005) recO 2500894..2501661 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  MHH79_RS13010 (MHH79_13010) - 2501698..2501841 (-) 144 WP_003230053.1 YqzL family protein -
  MHH79_RS13015 (MHH79_13015) era 2501989..2502894 (-) 906 WP_100506297.1 GTPase Era -
  MHH79_RS13020 (MHH79_13020) - 2502875..2503285 (-) 411 WP_003230049.1 cytidine deaminase -
  MHH79_RS13025 (MHH79_13025) - 2503404..2503775 (-) 372 WP_100506296.1 diacylglycerol kinase family protein -
  MHH79_RS13030 (MHH79_13030) ybeY 2503756..2504229 (-) 474 WP_340034594.1 rRNA maturation RNase YbeY -
  MHH79_RS13035 (MHH79_13035) pgpH 2504230..2506365 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=969118 MHH79_RS13005 WP_015384118.1 2500894..2501661(-) (recO) [Bacillus sp. FSL K6-0993]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=969118 MHH79_RS13005 WP_015384118.1 2500894..2501661(-) (recO) [Bacillus sp. FSL K6-0993]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATACTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment