Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   MHH79_RS12480 Genome accession   NZ_CP150275
Coordinates   2411002..2411805 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2406002..2416805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS12455 (MHH79_12455) - 2407145..2407876 (-) 732 WP_063335281.1 glycerophosphodiester phosphodiesterase -
  MHH79_RS12460 (MHH79_12460) - 2407949..2408569 (-) 621 WP_100506312.1 N-acetylmuramoyl-L-alanine amidase -
  MHH79_RS12465 (MHH79_12465) - 2408589..2408885 (-) 297 WP_014480225.1 hypothetical protein -
  MHH79_RS12470 (MHH79_12470) - 2409193..2409345 (+) 153 WP_015384065.1 hypothetical protein -
  MHH79_RS12475 (MHH79_12475) - 2409418..2410536 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  MHH79_RS12480 (MHH79_12480) spo0A 2411002..2411805 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  MHH79_RS12485 (MHH79_12485) spoIVB 2412080..2413360 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  MHH79_RS12490 (MHH79_12490) recN 2413535..2415265 (-) 1731 WP_340034547.1 DNA repair protein RecN Machinery gene
  MHH79_RS12495 (MHH79_12495) argR 2415302..2415751 (-) 450 WP_015384067.1 arginine repressor ArgR -
  MHH79_RS12500 (MHH79_12500) - 2415849..2416694 (-) 846 WP_327844505.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=969107 MHH79_RS12480 WP_003226427.1 2411002..2411805(-) (spo0A) [Bacillus sp. FSL K6-0993]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=969107 MHH79_RS12480 WP_003226427.1 2411002..2411805(-) (spo0A) [Bacillus sp. FSL K6-0993]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACACATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACAGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment