Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MHH79_RS11090 Genome accession   NZ_CP150275
Coordinates   2177205..2177825 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2172205..2182825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS11050 (MHH79_11050) - 2173337..2173843 (-) 507 WP_100506402.1 PTS glucose transporter subunit IIA -
  MHH79_RS11055 (MHH79_11055) - 2173981..2174400 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  MHH79_RS11060 (MHH79_11060) - 2174421..2174798 (-) 378 WP_340034385.1 YppG family protein -
  MHH79_RS11065 (MHH79_11065) - 2174986..2175174 (+) 189 WP_003230690.1 YppF family protein -
  MHH79_RS11070 (MHH79_11070) - 2175213..2175584 (-) 372 WP_063335219.1 YppE family protein -
  MHH79_RS11075 (MHH79_11075) - 2175630..2175875 (-) 246 WP_004398488.1 YppD family protein -
  MHH79_RS11080 (MHH79_11080) sspM 2176073..2176177 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MHH79_RS11085 (MHH79_11085) - 2176202..2177164 (-) 963 WP_340034388.1 DUF2515 domain-containing protein -
  MHH79_RS11090 (MHH79_11090) recU 2177205..2177825 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MHH79_RS11095 (MHH79_11095) - 2177847..2180603 (+) 2757 WP_340034389.1 PBP1A family penicillin-binding protein -
  MHH79_RS11100 (MHH79_11100) - 2180678..2181172 (-) 495 WP_340034391.1 YpoC family protein -
  MHH79_RS11105 (MHH79_11105) nth 2181169..2181828 (-) 660 WP_340034393.1 endonuclease III -
  MHH79_RS11110 (MHH79_11110) dnaD 2181847..2182545 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=969106 MHH79_RS11090 WP_004399067.1 2177205..2177825(+) (recU) [Bacillus sp. FSL K6-0993]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=969106 MHH79_RS11090 WP_004399067.1 2177205..2177825(+) (recU) [Bacillus sp. FSL K6-0993]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCGTCGACAACAGACTACAATGGGATTTACAAAGGGCGATATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment