Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MHH79_RS08665 Genome accession   NZ_CP150275
Coordinates   1655245..1656138 (+) Length   297 a.a.
NCBI ID   WP_063335350.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1650245..1661138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS08645 (MHH79_08645) - 1650915..1652645 (+) 1731 WP_063335348.1 hypothetical protein -
  MHH79_RS08650 (MHH79_08650) - 1652642..1652923 (+) 282 WP_063335349.1 FlhB-like flagellar biosynthesis protein -
  MHH79_RS08655 (MHH79_08655) sucC 1653096..1654253 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  MHH79_RS08660 (MHH79_08660) sucD 1654282..1655184 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  MHH79_RS08665 (MHH79_08665) dprA 1655245..1656138 (+) 894 WP_063335350.1 DNA-processing protein DprA Machinery gene
  MHH79_RS08670 (MHH79_08670) topA 1656326..1658401 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  MHH79_RS08675 (MHH79_08675) trmFO 1658477..1659784 (+) 1308 WP_063335351.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHH79_RS08680 (MHH79_08680) xerC 1659852..1660766 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32890.14 Da        Isoelectric Point: 9.8232

>NTDB_id=969102 MHH79_RS08665 WP_063335350.1 1655245..1656138(+) (dprA) [Bacillus sp. FSL K6-0993]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSNQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGISEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=969102 MHH79_RS08665 WP_063335350.1 1655245..1656138(+) (dprA) [Bacillus sp. FSL K6-0993]
TTGGATCAGGCCGCTGCCTGCTTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAACCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGAATAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGGCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Lactococcus lactis subsp. cremoris KW2

41.729

89.562

0.374

Multiple sequence alignment