Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MHH79_RS05650 Genome accession   NZ_CP150275
Coordinates   1089714..1090292 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0993     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084714..1095292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH79_RS05630 (MHH79_05630) hemAT 1085225..1086523 (-) 1299 WP_309529742.1 heme-based aerotactic transducer HemAT -
  MHH79_RS05635 (MHH79_05635) - 1086662..1088191 (-) 1530 WP_181218753.1 FAD-dependent oxidoreductase -
  MHH79_RS05640 (MHH79_05640) - 1088303..1089160 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  MHH79_RS05645 (MHH79_05645) - 1089188..1089421 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  MHH79_RS05650 (MHH79_05650) comK 1089714..1090292 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  MHH79_RS05655 (MHH79_05655) - 1090339..1091238 (-) 900 WP_063334995.1 SDR family oxidoreductase -
  MHH79_RS05660 (MHH79_05660) - 1091456..1091725 (+) 270 WP_100506218.1 excalibur calcium-binding domain-containing protein -
  MHH79_RS05665 (MHH79_05665) - 1091769..1093238 (-) 1470 WP_340035030.1 sodium:solute symporter -
  MHH79_RS05670 (MHH79_05670) - 1093235..1093435 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  MHH79_RS05675 (MHH79_05675) - 1093643..1094005 (-) 363 WP_003233132.1 hypothetical protein -
  MHH79_RS05680 (MHH79_05680) - 1094157..1094780 (+) 624 WP_010886465.1 VTT domain-containing protein -
  MHH79_RS05685 (MHH79_05685) lepB 1094782..1095288 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=969087 MHH79_RS05650 WP_015483050.1 1089714..1090292(+) (comK) [Bacillus sp. FSL K6-0993]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=969087 MHH79_RS05650 WP_015483050.1 1089714..1090292(+) (comK) [Bacillus sp. FSL K6-0993]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment