Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MHI24_RS06870 Genome accession   NZ_CP150274
Coordinates   1542140..1543900 (+) Length   586 a.a.
NCBI ID   WP_340024844.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL K6-1096     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1514362..1545170 1542140..1543900 within 0


Gene organization within MGE regions


Location: 1514362..1545170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI24_RS06760 (MHI24_06760) - 1514368..1516101 (+) 1734 WP_340024822.1 collagen-like protein -
  MHI24_RS06765 (MHI24_06765) - 1516171..1517366 (+) 1196 Protein_1351 collagen-like protein -
  MHI24_RS06770 (MHI24_06770) - 1518422..1520158 (+) 1737 WP_340024823.1 collagen-like protein -
  MHI24_RS06775 (MHI24_06775) - 1520267..1520983 (+) 717 WP_340024824.1 hypothetical protein -
  MHI24_RS06780 (MHI24_06780) - 1520965..1522008 (+) 1044 WP_340024825.1 hypothetical protein -
  MHI24_RS06785 (MHI24_06785) - 1522517..1524253 (+) 1737 WP_340024823.1 collagen-like protein -
  MHI24_RS06790 (MHI24_06790) - 1524362..1526104 (+) 1743 WP_340024826.1 collagen-like protein -
  MHI24_RS06795 (MHI24_06795) - 1526315..1526755 (+) 441 WP_340024827.1 hypothetical protein -
  MHI24_RS06800 (MHI24_06800) - 1527193..1528260 (+) 1068 WP_340024829.1 hypothetical protein -
  MHI24_RS06805 (MHI24_06805) - 1528505..1529704 (+) 1200 WP_340026620.1 MFS transporter -
  MHI24_RS06810 (MHI24_06810) - 1529957..1531354 (+) 1398 WP_340024831.1 collagen-like protein -
  MHI24_RS06815 (MHI24_06815) - 1531372..1531551 (-) 180 WP_340024832.1 hypothetical protein -
  MHI24_RS06820 (MHI24_06820) - 1531786..1532469 (-) 684 WP_340024833.1 GDSL-type esterase/lipase family protein -
  MHI24_RS06825 (MHI24_06825) - 1532679..1533362 (+) 684 WP_340024834.1 pectate lyase -
  MHI24_RS06830 (MHI24_06830) - 1533611..1534384 (+) 774 WP_340024836.1 amino acid ABC transporter substrate-binding protein -
  MHI24_RS06835 (MHI24_06835) - 1534411..1535070 (+) 660 WP_340024837.1 amino acid ABC transporter permease -
  MHI24_RS06840 (MHI24_06840) - 1535096..1535839 (+) 744 WP_340026621.1 amino acid ABC transporter ATP-binding protein -
  MHI24_RS06845 (MHI24_06845) - 1536118..1537248 (-) 1131 WP_340024838.1 AI-2E family transporter -
  MHI24_RS06850 (MHI24_06850) - 1537426..1538097 (+) 672 WP_340024839.1 response regulator transcription factor -
  MHI24_RS06855 (MHI24_06855) - 1538094..1539167 (+) 1074 WP_340024841.1 HAMP domain-containing sensor histidine kinase -
  MHI24_RS06860 (MHI24_06860) - 1539157..1540218 (-) 1062 WP_340024842.1 suppressor of fused domain protein -
  MHI24_RS06865 (MHI24_06865) rcrP 1540383..1542140 (+) 1758 WP_340024843.1 ABC transporter ATP-binding protein Regulator
  MHI24_RS06870 (MHI24_06870) rcrQ 1542140..1543900 (+) 1761 WP_340024844.1 ABC transporter ATP-binding protein Regulator
  MHI24_RS06875 (MHI24_06875) - 1543986..1545170 (-) 1185 WP_340024846.1 NADP-dependent malic enzyme -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 63869.86 Da        Isoelectric Point: 6.5108

>NTDB_id=969042 MHI24_RS06870 WP_340024844.1 1542140..1543900(+) (rcrQ) [Paenibacillus sp. FSL K6-1096]
MRTKNTGQNTWSKLLRYSRRYVPVIAIALLSAAAGTVLTLLGPEMLADITDKITAGLAGAIDMKGIAAIGLTLAVIYGIS
WVLSLTEGLIMSYVTQKVSKGLRTDLAHKMNRLPLSYYNKSATGDILSRVTNDVDSIGQAMNQSVAMIVTAAAMFTGSMI
LMLRTNVVMTLTAVAATLIGFALITVIMKQSQKYFAGQQEYLGKINGHVEEVYTGHQVVKAYNGEAQMRSTFQELNQGLK
RSAFKAQFLSGLMPPLMDFIGNLGFVAVCIVGAVLTLKGTISFGVIVAFIMYVRYFTQPLSQIAQAAQNLQLASAAGGRV
FEFLEEAEMADESGKTQKLPAAQGRVRFDRVKFAYEGSEKLVIKDFSAEVAPGQKVAIVGPTGAGKTTLVNLLTRFNELT
GGEIYIDDVPVSSLTRENIHDQFCMVLQDTWLFEGTIRENLVYNQPDITDSKLEEACKAVGLHHFIQTLSGGYDTILDDK
VNLSAGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDQLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGNHAELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=969042 MHI24_RS06870 WP_340024844.1 1542140..1543900(+) (rcrQ) [Paenibacillus sp. FSL K6-1096]
ATGCGAACCAAGAATACAGGACAGAACACCTGGAGCAAGCTGCTCCGCTACAGCCGCAGATATGTTCCGGTCATCGCGAT
TGCTCTGCTGAGCGCGGCAGCCGGAACAGTGCTGACACTGCTCGGCCCGGAGATGCTGGCGGACATTACCGACAAGATTA
CGGCCGGCCTCGCGGGCGCGATTGATATGAAGGGTATCGCAGCCATTGGCCTTACCCTTGCCGTGATCTATGGCATCAGC
TGGGTATTGTCGCTCACGGAGGGGCTGATTATGTCGTATGTGACCCAGAAGGTCTCGAAGGGGTTACGGACTGATCTCGC
GCACAAAATGAACCGCCTCCCCCTCTCCTACTACAACAAATCCGCTACAGGGGACATCCTCTCCCGGGTGACGAATGATG
TGGACAGCATCGGGCAAGCGATGAACCAGAGTGTGGCGATGATCGTGACTGCCGCAGCCATGTTCACCGGCTCGATGATT
CTGATGCTGCGCACGAATGTTGTAATGACTCTTACCGCTGTCGCGGCGACCCTCATCGGCTTTGCCCTGATTACGGTGAT
TATGAAGCAATCGCAGAAGTATTTTGCCGGGCAGCAGGAATACCTGGGCAAAATCAACGGTCATGTCGAGGAGGTCTACA
CCGGACACCAGGTGGTCAAGGCCTATAACGGTGAAGCGCAGATGCGCAGCACCTTCCAGGAATTGAACCAGGGGCTGAAG
AGAAGCGCGTTCAAGGCCCAATTCCTCTCCGGGCTGATGCCGCCGCTGATGGACTTCATCGGGAATCTCGGCTTCGTCGC
CGTCTGTATCGTTGGTGCAGTGCTGACGCTGAAGGGCACCATCTCCTTCGGCGTGATCGTTGCCTTCATTATGTATGTGC
GTTATTTCACCCAGCCGTTGTCGCAGATCGCCCAGGCTGCGCAGAATCTGCAGCTGGCCTCCGCCGCCGGAGGACGCGTA
TTTGAATTTCTGGAGGAGGCGGAAATGGCCGATGAGAGCGGCAAAACGCAGAAGCTGCCTGCTGCCCAGGGCAGGGTGCG
GTTCGATAGGGTGAAGTTCGCTTATGAGGGGTCGGAGAAGCTGGTGATCAAGGACTTCTCGGCTGAAGTGGCGCCCGGGC
AAAAGGTTGCCATCGTCGGTCCAACCGGAGCAGGTAAAACCACGCTTGTGAATCTGCTCACCCGGTTCAACGAGCTGACC
GGCGGGGAGATCTATATTGATGATGTCCCGGTCAGCAGCCTGACCAGAGAGAATATTCATGACCAGTTCTGCATGGTGCT
GCAGGATACCTGGCTGTTCGAGGGCACCATCCGCGAGAATCTGGTCTATAATCAGCCGGATATTACGGACAGCAAGCTGG
AGGAAGCGTGCAAGGCTGTGGGCCTGCACCACTTCATTCAGACCTTAAGCGGCGGGTACGACACTATTCTGGACGATAAG
GTCAATCTGTCAGCCGGACAAAAGCAGCAGCTCACCATCGCCCGCGCCATGCTGAAGGATGCGCCGATGCTCATTCTGGA
CGAAGCCACCAGCTCCGTGGATACGCGGACCGAGCTCTTAATTCAGCAGGCCATGGATCAGTTAATGGAAGGCCGGACCT
CCTTCGTCATCGCCCACCGGCTGTCCACGATCAAGAACGCCGATGTAATCCTTGTCCTGAAGGACGGCGACATCCTGGAG
AGCGGCAATCATGCGGAGCTGCTGGCGAAGAACGGCTTCTATGCCGAGCTGTATAACAGCCAGTTTGAGCAGGCTTCCTG
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.561

99.147

0.541

Multiple sequence alignment