Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MHI24_RS06865 Genome accession   NZ_CP150274
Coordinates   1540383..1542140 (+) Length   585 a.a.
NCBI ID   WP_340024843.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL K6-1096     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535383..1547140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI24_RS06845 (MHI24_06845) - 1536118..1537248 (-) 1131 WP_340024838.1 AI-2E family transporter -
  MHI24_RS06850 (MHI24_06850) - 1537426..1538097 (+) 672 WP_340024839.1 response regulator transcription factor -
  MHI24_RS06855 (MHI24_06855) - 1538094..1539167 (+) 1074 WP_340024841.1 HAMP domain-containing sensor histidine kinase -
  MHI24_RS06860 (MHI24_06860) - 1539157..1540218 (-) 1062 WP_340024842.1 suppressor of fused domain protein -
  MHI24_RS06865 (MHI24_06865) rcrP 1540383..1542140 (+) 1758 WP_340024843.1 ABC transporter ATP-binding protein Regulator
  MHI24_RS06870 (MHI24_06870) rcrQ 1542140..1543900 (+) 1761 WP_340024844.1 ABC transporter ATP-binding protein Regulator
  MHI24_RS06875 (MHI24_06875) - 1543986..1545170 (-) 1185 WP_340024846.1 NADP-dependent malic enzyme -
  MHI24_RS06880 (MHI24_06880) - 1545434..1546786 (-) 1353 WP_340024847.1 2-hydroxycarboxylate transporter family protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 63846.15 Da        Isoelectric Point: 7.7162

>NTDB_id=969041 MHI24_RS06865 WP_340024843.1 1540383..1542140(+) (rcrP) [Paenibacillus sp. FSL K6-1096]
MLRILKNLERGEWFLFAISLLFISAQVWLDLELPGYMSEITRLVQTPGSELREILTAGGWMLLCALGSVATSIVVAGIAA
RIGTGLSARLRAKLFDKVQSFSLEEISSFSTPSLITRSTNDITQVQMLIVIGLQMLVKAPILAVWALLKITGKSWQWSLA
TGVSVGLLVLIVSVAIALALPKFTRLQKLTDNLNRASRENLTGLQVIRAYNAEQYQEGKFAAVNDEVTRTNLFANNVLTT
LMPSISLIMSGLSLSIYWIGALLIQSADVPARLGLFSDMIVFSSYAMQVVMAFMMLIVIFILLPRAQVSAVRIQEVLETA
PRLKNGAVTRFPADSETVLEFRDVSFKYPDAEEEVLDNISFTVKRGETVAFIGSTGCGKSTLLNLIPRFYDATGGEVLVK
GLNVKEYDQQVLRSIMGYVSQKAVLFGGTVASNIAFGGKGSGEILSSDVTDAAYTSQASEFVDKLEGGYDAHIAQGGSNL
SGGQKQRLSIARAIARRPELLIFDDSFSALDYKTDRKLRSELKKDARSATKLIVAQRIGTIKDADTIIVLEAGRMAGKGT
HDELMQTCAVYQEIAYSQLTKEELA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=969041 MHI24_RS06865 WP_340024843.1 1540383..1542140(+) (rcrP) [Paenibacillus sp. FSL K6-1096]
ATGCTGAGAATACTGAAGAATCTGGAGCGCGGAGAATGGTTCTTGTTCGCCATCAGCTTACTGTTTATTAGCGCGCAGGT
GTGGCTGGATCTGGAGCTGCCCGGCTATATGAGCGAGATTACCCGGCTGGTCCAGACCCCGGGCAGCGAGCTGCGGGAGA
TTCTGACCGCCGGAGGGTGGATGCTGTTATGCGCGCTCGGCAGCGTCGCCACTTCGATCGTTGTGGCCGGGATTGCCGCC
CGGATCGGCACTGGCTTGTCCGCAAGACTGCGGGCGAAATTGTTCGACAAGGTGCAGTCCTTCTCGCTGGAGGAGATCAG
CAGCTTCTCCACGCCCAGCCTGATTACCCGCTCCACAAATGATATTACCCAGGTGCAGATGCTAATTGTCATCGGCCTGC
AGATGCTGGTCAAGGCCCCTATCCTTGCCGTATGGGCGCTCCTCAAGATTACGGGGAAAAGCTGGCAATGGTCGCTCGCT
ACAGGCGTCTCGGTTGGCTTGCTGGTCTTGATCGTCTCTGTAGCCATTGCGCTGGCGCTGCCTAAATTCACCAGGCTGCA
GAAGCTGACCGACAACCTGAACCGGGCCTCCAGAGAGAATCTGACCGGCCTTCAGGTGATCCGGGCTTACAATGCCGAGC
AGTACCAGGAAGGCAAGTTCGCTGCTGTGAACGACGAGGTGACCCGCACCAATCTGTTCGCGAACAATGTCTTGACCACT
CTGATGCCAAGTATCTCGCTGATCATGAGCGGACTCAGCCTCTCGATCTATTGGATTGGAGCCTTGCTTATCCAGTCCGC
TGATGTTCCTGCCCGGCTGGGATTATTCTCGGATATGATCGTGTTCTCATCGTATGCGATGCAGGTGGTGATGGCTTTTA
TGATGCTGATTGTGATCTTCATTCTGCTGCCCCGGGCCCAGGTATCGGCCGTACGCATCCAGGAAGTGCTGGAGACGGCT
CCCCGCCTGAAGAACGGAGCGGTTACCCGCTTCCCTGCGGACAGTGAGACGGTGCTGGAGTTCAGGGACGTCAGCTTTAA
GTACCCCGATGCGGAGGAGGAGGTGCTTGATAACATCAGCTTCACGGTGAAGCGCGGGGAGACGGTGGCTTTTATCGGGT
CAACAGGCTGCGGCAAAAGCACTCTCCTCAACCTCATCCCCCGCTTCTACGATGCTACCGGAGGCGAGGTGCTGGTCAAA
GGGCTTAATGTCAAGGAATATGACCAGCAGGTGCTGCGCAGCATCATGGGGTATGTCTCCCAGAAGGCAGTGCTGTTTGG
CGGGACGGTTGCGTCTAATATTGCATTTGGCGGGAAGGGCTCCGGCGAGATCCTCAGCTCCGATGTTACTGATGCAGCTT
ACACCTCGCAAGCCTCAGAGTTCGTGGACAAGCTGGAGGGCGGCTATGATGCTCATATCGCGCAGGGCGGCTCCAATCTG
TCCGGGGGACAGAAGCAGCGTTTGTCGATTGCCAGAGCGATTGCCCGGCGGCCGGAGCTGCTCATCTTCGACGATTCGTT
CTCGGCGCTGGACTACAAGACGGACCGCAAGCTGCGCAGCGAGCTGAAGAAGGATGCCCGAAGCGCGACGAAGCTGATCG
TGGCCCAGCGCATCGGGACGATCAAGGACGCCGACACGATCATTGTGCTTGAAGCCGGACGGATGGCCGGGAAGGGCACC
CATGACGAATTGATGCAGACCTGCGCAGTCTATCAGGAGATTGCTTATTCCCAGCTGACGAAGGAGGAGCTTGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.161

100

0.501

Multiple sequence alignment