Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACK3C0_RS12590 Genome accession   NZ_CP176810
Coordinates   2601091..2603292 (+) Length   733 a.a.
NCBI ID   WP_004084781.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain IAS-AXF64H11     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2596091..2608292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3C0_RS12575 (ACK3C0_12575) - 2597440..2598801 (-) 1362 WP_004084774.1 MATE family efflux transporter -
  ACK3C0_RS12580 (ACK3C0_12580) - 2599122..2599544 (-) 423 WP_004087428.1 DUF3106 domain-containing protein -
  ACK3C0_RS12585 (ACK3C0_12585) - 2599688..2600653 (-) 966 WP_004084779.1 sigma-70 region 4 domain-containing protein -
  ACK3C0_RS12590 (ACK3C0_12590) priA 2601091..2603292 (+) 2202 WP_004084781.1 primosomal protein N' Machinery gene
  ACK3C0_RS12595 (ACK3C0_12595) rpoH 2604789..2605655 (-) 867 WP_004084783.1 RNA polymerase sigma factor RpoH -
  ACK3C0_RS12600 (ACK3C0_12600) ung 2605780..2606541 (-) 762 WP_004084785.1 uracil-DNA glycosylase -
  ACK3C0_RS12605 (ACK3C0_12605) - 2606547..2607395 (-) 849 WP_004084787.1 response regulator -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 80970.27 Da        Isoelectric Point: 9.5266

>NTDB_id=969025 ACK3C0_RS12590 WP_004084781.1 2601091..2603292(+) (priA) [Xylella fastidiosa subsp. multiplex strain IAS-AXF64H11]
MPPTILRVALPIPLPQCFDYLPPSGIPLPDSTLGCRIRVPFGKRELIGVVVELPSAEMSVPLREAFAWIDRIPILDGELA
QSLQWLSHYTHTPLGEILATALPGLLRHGKPLPETWTCWAWRLTETGHTAAPKLRRNSRSAQLAELLTASDQTEDALNTR
MNHWRAVARNLTKRGYVERIKKPTTVPVIIQTTSNTVPVLNTEQQKAVETLNANVGFKIYLLDGVTGSGKTEVYLQAIAT
CLAASKQALVLVPEIGLTPQLLTNFHARLGIPVHALHSKLADSERARVWATARCGEARLVLGTRSAVFTPLPHAGLIIVD
EEHDTSYKQQDGIRYNARDFALLRGKALNVPVILGSATPSLESLYNAHNGRYKHLRLTYRAGQAYAPQVRVLDVRKRPLK
DGLSPEVLTGINATLARDEQVLVFKNRCGYSPVLLCHDCGWTATCQQCSTSVHHTPMTVYSGGTYLQCHHCNARQPMPLS
CPDCGSTALQPQGIGTERLEARLIEAFPKHPVVRIDRNTTQHRDGLKTQFTKLGNAAGILVGTQILAKGHHLPRLTMVVV
VGIDEGLFSADFRATEKLSQQLIQVAGRAGRAKHAGEVWLQTHHPDHPLLQTLINGGYHTFANTELQQRQAAGLPPFAHL
ALLRAEAKDTTSTQQFLATVRKHMPTNNAVECYGPMSAPMPRRAGYERYQLLLSSSQRNALHRTLNVLIPAIHSLPEARR
VRWSLDVDPVDLY

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=969025 ACK3C0_RS12590 WP_004084781.1 2601091..2603292(+) (priA) [Xylella fastidiosa subsp. multiplex strain IAS-AXF64H11]
ATGCCCCCTACTATCCTACGTGTGGCGTTGCCAATCCCTTTACCGCAATGCTTCGACTATCTGCCGCCAAGCGGCATACC
ACTCCCAGATTCAACCTTAGGCTGCCGCATACGTGTGCCATTCGGGAAACGTGAGCTGATCGGTGTAGTGGTCGAACTTC
CATCAGCCGAAATGTCGGTACCATTACGCGAGGCATTCGCCTGGATTGACCGTATACCAATTCTAGATGGCGAGCTGGCA
CAATCGTTACAGTGGCTGTCACACTACACGCATACCCCACTAGGTGAGATATTAGCTACGGCTCTTCCCGGGCTGTTACG
TCATGGTAAACCCTTACCAGAGACCTGGACCTGCTGGGCTTGGCGTCTAACCGAAACCGGGCACACTGCCGCTCCCAAGC
TGCGTCGCAACAGCCGCTCAGCACAACTGGCTGAATTACTCACCGCCAGTGATCAAACGGAAGATGCACTTAACACTCGG
ATGAATCACTGGCGCGCAGTTGCACGCAACCTAACCAAGCGTGGTTATGTCGAACGCATCAAGAAACCTACAACCGTACC
TGTAATCATCCAGACCACAAGCAACACCGTACCTGTACTCAACACTGAACAACAGAAAGCAGTTGAGACACTAAACGCTA
ACGTAGGCTTCAAAATTTATCTTCTAGATGGAGTCACCGGCAGCGGTAAAACAGAAGTCTACCTACAAGCCATCGCTACC
TGCTTAGCTGCGAGTAAACAAGCATTGGTCTTAGTCCCTGAGATCGGCTTGACACCTCAACTTCTAACCAACTTCCATGC
CCGCCTCGGAATACCCGTGCATGCCCTGCACTCCAAATTGGCAGACAGCGAACGCGCCCGCGTGTGGGCGACGGCACGAT
GTGGCGAGGCACGACTGGTACTAGGAACTCGCTCAGCGGTGTTCACCCCCCTACCTCATGCCGGACTAATTATAGTAGAT
GAGGAACACGACACGAGTTACAAGCAGCAAGACGGGATACGTTACAACGCGCGCGATTTCGCATTGTTGCGCGGCAAGGC
ACTAAACGTACCGGTCATCCTCGGGAGTGCCACTCCGTCACTGGAATCACTGTACAACGCGCATAACGGACGCTATAAGC
ACCTCCGCCTCACCTACCGTGCCGGTCAAGCGTATGCCCCTCAGGTGCGCGTACTAGACGTGCGCAAAAGACCACTGAAA
GACGGCCTATCACCCGAGGTATTAACAGGAATTAACGCAACTTTAGCGCGTGATGAGCAGGTACTCGTATTCAAGAACCG
GTGCGGCTATTCACCAGTGTTGCTATGTCACGACTGCGGCTGGACCGCTACCTGTCAGCAGTGCAGTACATCAGTGCACC
ACACACCAATGACTGTATACAGCGGCGGAACCTACTTACAGTGCCACCACTGCAACGCACGCCAGCCAATGCCACTATCA
TGCCCAGACTGCGGCAGTACAGCGCTACAGCCGCAGGGCATAGGCACCGAACGCCTAGAAGCTCGCCTGATTGAGGCTTT
CCCTAAACACCCTGTGGTGCGTATCGATCGCAACACAACCCAGCACCGCGACGGACTAAAAACCCAATTCACCAAACTCG
GCAATGCCGCTGGCATTTTAGTAGGCACCCAGATTCTAGCCAAAGGGCATCACCTACCACGCTTAACGATGGTCGTGGTC
GTTGGAATCGACGAAGGCCTATTCTCAGCCGACTTCCGCGCCACTGAAAAGCTCTCCCAGCAACTGATCCAAGTTGCTGG
CCGCGCTGGCCGTGCTAAACATGCCGGAGAAGTCTGGCTACAAACTCACCACCCTGATCACCCTCTGTTGCAAACACTAA
TCAACGGCGGCTACCACACCTTTGCTAATACGGAGCTACAACAACGCCAAGCCGCTGGGTTGCCGCCATTCGCACACTTG
GCACTCCTGCGTGCTGAAGCGAAAGACACCACCTCAACACAACAATTTCTCGCCACGGTACGCAAACACATGCCAACCAA
CAATGCAGTCGAATGCTACGGCCCAATGTCGGCTCCCATGCCGCGCCGCGCCGGCTACGAGCGCTACCAATTATTGCTGT
CCAGCTCCCAACGTAACGCACTACACCGCACACTCAATGTCTTGATACCAGCGATTCATTCACTGCCAGAAGCACGCCGA
GTCCGCTGGTCGTTAGACGTGGATCCAGTTGATCTTTACTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(505-593)

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-103)

DEAD/DEAH box helicase (DEAD)

(204-362)

Primosomal protein N C-terminal domain (PriA_C)

(636-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

40.541

100

0.409

Multiple sequence alignment