Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   ACK3C0_RS09320 Genome accession   NZ_CP176810
Coordinates   1897612..1897944 (-) Length   110 a.a.
NCBI ID   WP_411393571.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain IAS-AXF64H11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892612..1902944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3C0_RS09290 (ACK3C0_09290) - 1893036..1893704 (+) 669 WP_411393570.1 hypothetical protein -
  ACK3C0_RS09295 (ACK3C0_09295) - 1893701..1893979 (+) 279 WP_038230497.1 VRR-NUC domain-containing protein -
  ACK3C0_RS09300 (ACK3C0_09300) - 1893981..1894491 (-) 511 Protein_1820 hypothetical protein -
  ACK3C0_RS09305 (ACK3C0_09305) - 1894576..1895992 (+) 1417 Protein_1821 SNF2-related protein -
  ACK3C0_RS09310 (ACK3C0_09310) - 1896216..1896539 (+) 324 WP_038230907.1 helix-turn-helix transcriptional regulator -
  ACK3C0_RS09315 (ACK3C0_09315) - 1896970..1897551 (+) 582 WP_411393549.1 site-specific integrase -
  ACK3C0_RS09320 (ACK3C0_09320) pilZ 1897612..1897944 (-) 333 WP_411393571.1 PilZ domain-containing protein Machinery gene
  ACK3C0_RS09325 (ACK3C0_09325) - 1899164..1899343 (-) 180 Protein_1825 aminodeoxychorismate lyase -
  ACK3C0_RS09330 (ACK3C0_09330) - 1899507..1899641 (-) 135 WP_411393572.1 hypothetical protein -
  ACK3C0_RS09335 (ACK3C0_09335) - 1899783..1900007 (-) 225 WP_411393573.1 hypothetical protein -
  ACK3C0_RS09340 (ACK3C0_09340) - 1900527..1900907 (+) 381 WP_411393574.1 hypothetical protein -
  ACK3C0_RS09345 (ACK3C0_09345) - 1901306..1901458 (-) 153 WP_411393575.1 hypothetical protein -
  ACK3C0_RS09350 (ACK3C0_09350) - 1901534..1901950 (-) 417 WP_411393576.1 hypothetical protein -
  ACK3C0_RS09355 (ACK3C0_09355) - 1902012..1902458 (-) 447 WP_411393577.1 hypothetical protein -
  ACK3C0_RS09360 (ACK3C0_09360) - 1902506..1902862 (-) 357 WP_411393578.1 hypothetical protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11893.84 Da        Isoelectric Point: 9.5701

>NTDB_id=969003 ACK3C0_RS09320 WP_411393571.1 1897612..1897944(-) (pilZ) [Xylella fastidiosa subsp. multiplex strain IAS-AXF64H11]
MSTTSTRQGILSLTLKDRAALYSAYMMYMQNGAIFVPTPKRYFLGNEVFLLLTLPDSSERLPVAGKVVWCTPVGAQGNRV
AGIGVQLPDGPGGEVVRNRIETLLAGMFNS

Nucleotide


Download         Length: 333 bp        

>NTDB_id=969003 ACK3C0_RS09320 WP_411393571.1 1897612..1897944(-) (pilZ) [Xylella fastidiosa subsp. multiplex strain IAS-AXF64H11]
ATGAGTACAACAAGTACGCGCCAGGGTATTCTGTCGCTCACCCTGAAAGACAGGGCGGCGCTCTATAGCGCCTATATGAT
GTATATGCAAAATGGAGCGATTTTCGTCCCTACGCCCAAACGTTATTTCCTTGGTAATGAAGTATTTTTGTTGCTGACCC
TCCCTGATTCCAGCGAGCGCTTACCGGTTGCTGGCAAAGTGGTCTGGTGTACTCCCGTTGGAGCCCAAGGCAATCGTGTT
GCGGGTATCGGTGTGCAACTGCCCGATGGTCCAGGAGGGGAAGTGGTGCGCAATCGCATTGAGACGTTGCTTGCCGGCAT
GTTCAACTCATAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(13-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

39.604

91.818

0.364
  pilZ Legionella pneumophila strain ERS1305867

39.604

91.818

0.364

Multiple sequence alignment