Detailed information NTG0096892

Bioinformatically predicted

Overview

• Name: comB4
• Type: Machinery gene
• Locus tag: OO773_RS07495
• Genome accession: NZ_AP026769
• Coordinates: 1371134..1373437 (-)
• Length: 767 a.a.
• NCBI ID: WP_264828514.1
• Uniprot ID: -
• Organism: Helicobacter suis HS1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1366134..1378437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO773_RS07470 (HSHS1_14810)	-	1366205..1367125 (+)	921	WP_006564512.1	transaldolase	-
OO773_RS07475 (HSHS1_14820)	-	1367117..1368004 (-)	888	WP_006564511.1	aspartate carbamoyltransferase catalytic subunit	-
OO773_RS07480 (HSHS1_14830)	-	1368035..1368535 (+)	501	WP_006564510.1	hypothetical protein	-
OO773_RS07485 (HSHS1_14840)	nusA	1368607..1369731 (+)	1125	WP_034377202.1	transcription termination factor NusA	-
OO773_RS07490 (HSHS1_14850)	-	1369737..1370927 (-)	1191	Protein_1470	anaerobic C4-dicarboxylate transporter	-
OO773_RS07495 (HSHS1_14860)	comB4	1371134..1373437 (-)	2304	WP_264828514.1	FtsK/SpoIIIE domain-containing protein	Machinery gene
OO773_RS07500 (HSHS1_14870)	-	1373529..1374125 (-)	597	WP_006565383.1	outer membrane protein	-
OO773_RS07505	-	1374337..1374489 (-)	153	Protein_1473	DNA adenine methylase	-
OO773_RS07510	-	1374525..1374728 (+)	204	WP_158656545.1	hypothetical protein	-
OO773_RS07515	-	1375029..1375298 (-)	270	Protein_1475	type II restriction endonuclease	-
OO773_RS07520	-	1375305..1375523 (-)	219	Protein_1476	NADPH dehydrogenase	-
OO773_RS07525 (HSHS1_14890)	-	1375519..1375686 (-)	168	Protein_1477	DNA adenine methylase	-
OO773_RS10105 (HSHS1_14900)	-	1375791..1375991 (-)	201	WP_406600093.1	hypothetical protein	-
OO773_RS07535	-	1376094..1376273 (-)	180	WP_264828515.1	DNA adenine methylase	-
OO773_RS07540 (HSHS1_14910)	-	1376305..1377285 (-)	981	WP_406600087.1	NADPH dehydrogenase	-
OO773_RS07545	-	1377259..1377429 (-)	171	Protein_1481	TCP-1/cpn60 chaperonin family protein	-

Sequence

Protein

• Length: 767 a.a.
• Molecular weight: 87757.95 Da
• Isoelectric Point: 8.8126

>NTDB_id=96892 OO773_RS07495 WP_264828514.1 1371134..1373437(-) (comB4) [Helicobacter suis HS1]
MFHVLWDFLYNKTLDLLVGALPKVHCMTEENNILGLYDARFLLTKSEQLVGMLQIEGLSANAMAKEELQGYFQSKQNALD
QLQGVVLRVHTKRRKLQLKHDHHLSNPYAQSILNQFENKTIYENTYTLIFETTKSPIKDFLEQKKLEITTSASKQLYEHQ
AKLLSDCMSKITHALQPFKPKPLTATQALNFYAEFINGFFMPLKPTLGFLEDSYIATNVHFKKDYYIQEYHESRVHNRIL
GIKAYASKTLSSLVFTNLLHQEKELDIIFSIEPLETQKALSFIQEKIRLTISSLVKQELQEYYERIQAKQLCLQKIACNL
ILRHPHLETLNQETQEVLSLLSNGHLVGVVETLGLRPAYFSFFPGRLHLNPRLRCQSSQALACLLVFEKPNRGFKSNSWG
NMPLSVFKNLDHSPYLFNFHNQEVPHNTAQHSLHRANGHTMIIGATGTGKTTLMSFLMMSALKYDRLNILALDRAYGLFS
YTHYFSGTYNSGTHFKINPLSLKNSKYMNYVFTFFYSAMLNIPLKPQNQLDIQASNAISNTLKTLYATLPPQSFSLQDFK
DAFIHTQALNLEPYLHNPLFNALEDSLEFKTPITTINMDAISTNPKDLGLLAYYIFYKILHQALEYNRGFLLFIDEFKSY
AQNSILNTHINTLITQARKANGVVVLALQDTNQLNSIQDAASFIKNMGTLIFYPQKHIDSTALSRDFGIKLSHMEQHFLE
NTPMHAHQILVKNMGDGSSSIIDVNLQSLGPYLHIFNSNAGLAKHLQ

Nucleotide

• Length: 2304 bp

>NTDB_id=96892 OO773_RS07495 WP_264828514.1 1371134..1373437(-) (comB4) [Helicobacter suis HS1]
ATGTTCCATGTGCTGTGGGATTTTTTATACAATAAAACCCTAGATTTATTAGTAGGTGCTTTGCCAAAAGTACATTGCAT
GACTGAGGAAAATAATATTCTAGGGCTATATGATGCGCGCTTTTTACTCACTAAGAGCGAACAGTTAGTAGGAATGCTAC
AAATTGAGGGCTTGAGTGCAAATGCGATGGCCAAAGAGGAGCTACAAGGGTATTTTCAAAGTAAGCAAAATGCTTTAGAT
CAGTTGCAAGGGGTTGTTTTGCGCGTACACACTAAACGCCGTAAATTACAACTCAAACATGACCACCATTTGAGTAACCC
TTATGCCCAATCCATCCTTAATCAATTTGAAAACAAAACTATTTATGAAAACACCTACACTCTTATTTTTGAAACCACTA
AAAGCCCTATTAAAGATTTTTTAGAACAAAAGAAGCTAGAGATCACTACAAGTGCCTCCAAACAGCTGTATGAACACCAA
GCTAAACTGCTCTCTGATTGCATGTCTAAAATAACCCATGCACTCCAGCCCTTTAAACCAAAACCCCTCACCGCCACGCA
AGCCCTAAATTTCTACGCAGAATTTATCAACGGCTTTTTTATGCCTCTTAAGCCTACTTTGGGTTTTTTAGAAGATAGTT
ACATTGCGACTAATGTACATTTTAAAAAAGATTATTATATTCAAGAATATCATGAATCGCGCGTGCATAACCGCATTTTG
GGGATTAAGGCCTATGCTAGTAAAACTCTAAGCTCTTTAGTCTTTACAAACTTATTACACCAAGAAAAAGAATTAGACAT
TATTTTTTCTATAGAGCCTTTAGAGACGCAAAAAGCCCTGTCCTTTATCCAAGAAAAAATCCGTTTGACCATTAGCTCAC
TAGTCAAGCAAGAGTTACAAGAATATTATGAGCGTATCCAAGCCAAACAGCTTTGTTTACAAAAAATTGCCTGTAATCTT
ATTCTTAGACACCCCCATTTAGAAACACTCAACCAAGAAACCCAAGAGGTTTTAAGCCTTTTATCTAATGGACATCTAGT
AGGCGTTGTAGAAACCTTAGGACTTAGACCCGCTTATTTTTCCTTCTTTCCCGGGCGTTTGCATTTAAACCCTCGTTTGC
GTTGCCAAAGTTCTCAAGCCCTAGCTTGTTTACTCGTCTTTGAAAAGCCAAATCGTGGTTTTAAATCAAACTCTTGGGGA
AACATGCCCCTTAGTGTGTTTAAAAACCTCGATCATTCGCCCTATCTTTTTAATTTCCATAACCAAGAAGTACCACACAA
TACAGCACAACATAGTTTACATAGGGCTAATGGGCATACCATGATTATTGGCGCTACAGGAACGGGTAAGACGACTTTAA
TGAGTTTTTTAATGATGAGTGCGCTTAAATACGATCGGCTTAATATTCTAGCTTTAGATCGCGCCTATGGGTTGTTTTCC
TACACCCATTATTTTAGCGGCACTTACAACTCAGGTACGCATTTTAAAATCAACCCCCTATCTCTTAAAAACTCCAAATA
TATGAATTATGTCTTTACATTTTTTTATTCGGCTATGCTAAATATCCCCCTAAAGCCACAAAACCAGCTAGATATTCAAG
CCAGTAACGCCATTTCTAACACCCTTAAAACTTTATACGCTACCTTGCCCCCTCAAAGTTTTTCTTTGCAAGATTTTAAA
GACGCATTCATTCATACCCAAGCTTTAAACCTAGAACCCTATTTACATAACCCGCTTTTTAACGCCTTAGAAGATAGCCT
AGAATTTAAAACGCCTATCACAACTATTAACATGGACGCTATTAGTACTAATCCTAAAGATTTAGGGCTTTTGGCTTACT
ATATTTTCTATAAGATTTTACACCAAGCCCTAGAATACAACCGCGGCTTTTTACTCTTTATAGATGAATTTAAAAGTTAT
GCGCAAAATTCTATCCTAAACACACATATTAACACTTTAATCACCCAAGCTAGAAAGGCTAATGGGGTGGTGGTTTTGGC
CTTGCAAGATACAAACCAACTTAACTCTATCCAAGATGCGGCTAGTTTTATTAAAAACATGGGTACTTTGATCTTTTATC
CACAAAAACACATTGATAGTACAGCCCTTAGCCGTGATTTTGGAATCAAACTTAGCCACATGGAACAACACTTTTTAGAA
AACACCCCCATGCATGCCCACCAAATTCTAGTTAAAAACATGGGCGATGGTAGTTCTAGTATTATTGATGTTAATTTACA
ATCTCTAGGCCCTTATTTACATATTTTTAATTCCAATGCAGGCTTAGCCAAACATTTACAGTAA

Domains

Predicted by InterproScan.

• FtsK/SpoIIIE family (FtsK_SpoIIIE) (397-464)

• CagE, TrbE, VirB family, component of type IV transporter system (CagE_TrbE_VirB) (178-372)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB4	Helicobacter pylori 26695	51.688	100	0.519