Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   OO773_RS06720 Genome accession   NZ_AP026769
Coordinates   1225827..1226111 (-) Length   94 a.a.
NCBI ID   WP_006563999.1    Uniprot ID   -
Organism   Helicobacter suis HS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1220827..1231111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO773_RS06685 (HSHS1_13250) - 1221289..1222554 (+) 1266 WP_073117121.1 RNA-guided endonuclease TnpB family protein -
  OO773_RS06690 - 1222582..1222716 (-) 135 WP_000738747.1 hypothetical protein -
  OO773_RS06695 (HSHS1_13260) - 1222735..1223373 (-) 639 Protein_1311 transporter -
  OO773_RS06700 (HSHS1_13280) - 1223551..1224165 (-) 615 Protein_1312 FtsK/SpoIIIE domain-containing protein -
  OO773_RS06705 - 1224161..1224619 (-) 459 WP_264828735.1 hypothetical protein -
  OO773_RS10075 - 1224815..1224913 (-) 99 Protein_1314 integrase -
  OO773_RS10080 - 1224901..1225309 (-) 409 Protein_1315 transporter -
  OO773_RS06715 (HSHS1_13300) comB3 1225553..1225816 (-) 264 WP_006564000.1 hypothetical protein Machinery gene
  OO773_RS06720 (HSHS1_13310) comB2 1225827..1226111 (-) 285 WP_006563999.1 TrbC/VirB2 family protein Machinery gene
  OO773_RS06725 (HSHS1_13320) - 1226108..1226470 (-) 363 Protein_1318 hypothetical protein -
  OO773_RS10085 (HSHS1_13330) - 1226700..1227074 (-) 375 Protein_1319 integrase -
  OO773_RS10090 - 1227182..1227338 (-) 157 Protein_1320 integrase -
  OO773_RS06735 (HSHS1_13350) - 1227330..1227584 (+) 255 WP_264828496.1 hypothetical protein -
  OO773_RS06740 (HSHS1_13360) - 1227627..1227887 (+) 261 WP_050780145.1 hypothetical protein -
  OO773_RS06745 (HSHS1_13370) - 1227936..1228724 (+) 789 WP_073115667.1 hypothetical protein -
  OO773_RS06750 (HSHS1_13380) - 1228727..1229749 (+) 1023 WP_040499088.1 hypothetical protein -
  OO773_RS06755 (HSHS1_13390) ybeY 1229740..1230183 (+) 444 WP_050780143.1 rRNA maturation RNase YbeY -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10736.06 Da        Isoelectric Point: 11.1589

>NTDB_id=96891 OO773_RS06720 WP_006563999.1 1225827..1226111(-) (comB2) [Helicobacter suis HS1]
MKKLRHFRKLIAFLGFSPPLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=96891 OO773_RS06720 WP_006563999.1 1225827..1226111(-) (comB2) [Helicobacter suis HS1]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACCTTTATTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTCATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment