Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | OO773_RS06715 | Genome accession | NZ_AP026769 |
| Coordinates | 1225553..1225816 (-) | Length | 87 a.a. |
| NCBI ID | WP_006564000.1 | Uniprot ID | E7G366 |
| Organism | Helicobacter suis HS1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1220553..1230816
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO773_RS06675 | - | 1220620..1220730 (-) | 111 | Protein_1307 | type IV secretion system protein VirB7 | - |
| OO773_RS06680 (HSHS1_13240) | tnpA | 1220796..1221224 (-) | 429 | WP_034376438.1 | IS200/IS605 family transposase | - |
| OO773_RS06685 (HSHS1_13250) | - | 1221289..1222554 (+) | 1266 | WP_073117121.1 | RNA-guided endonuclease TnpB family protein | - |
| OO773_RS06690 | - | 1222582..1222716 (-) | 135 | WP_000738747.1 | hypothetical protein | - |
| OO773_RS06695 (HSHS1_13260) | - | 1222735..1223373 (-) | 639 | Protein_1311 | transporter | - |
| OO773_RS06700 (HSHS1_13280) | - | 1223551..1224165 (-) | 615 | Protein_1312 | FtsK/SpoIIIE domain-containing protein | - |
| OO773_RS06705 | - | 1224161..1224619 (-) | 459 | WP_264828735.1 | hypothetical protein | - |
| OO773_RS10075 | - | 1224815..1224913 (-) | 99 | Protein_1314 | integrase | - |
| OO773_RS10080 | - | 1224901..1225309 (-) | 409 | Protein_1315 | transporter | - |
| OO773_RS06715 (HSHS1_13300) | comB3 | 1225553..1225816 (-) | 264 | WP_006564000.1 | hypothetical protein | Machinery gene |
| OO773_RS06720 (HSHS1_13310) | comB2 | 1225827..1226111 (-) | 285 | WP_006563999.1 | TrbC/VirB2 family protein | Machinery gene |
| OO773_RS06725 (HSHS1_13320) | - | 1226108..1226470 (-) | 363 | Protein_1318 | hypothetical protein | - |
| OO773_RS10085 (HSHS1_13330) | - | 1226700..1227074 (-) | 375 | Protein_1319 | integrase | - |
| OO773_RS10090 | - | 1227182..1227338 (-) | 157 | Protein_1320 | integrase | - |
| OO773_RS06735 (HSHS1_13350) | - | 1227330..1227584 (+) | 255 | WP_264828496.1 | hypothetical protein | - |
| OO773_RS06740 (HSHS1_13360) | - | 1227627..1227887 (+) | 261 | WP_050780145.1 | hypothetical protein | - |
| OO773_RS06745 (HSHS1_13370) | - | 1227936..1228724 (+) | 789 | WP_073115667.1 | hypothetical protein | - |
| OO773_RS06750 (HSHS1_13380) | - | 1228727..1229749 (+) | 1023 | WP_040499088.1 | hypothetical protein | - |
| OO773_RS06755 (HSHS1_13390) | ybeY | 1229740..1230183 (+) | 444 | WP_050780143.1 | rRNA maturation RNase YbeY | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9974.84 Da Isoelectric Point: 5.7206
>NTDB_id=96890 OO773_RS06715 WP_006564000.1 1225553..1225816(-) (comB3) [Helicobacter suis HS1]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=96890 OO773_RS06715 WP_006564000.1 1225553..1225816(-) (comB3) [Helicobacter suis HS1]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGCTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAAAG
CTTTTTAATCGCAGGATTTGTTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAATCCAATTCATTTTATGCTTAA
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGCTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAAAG
CTTTTTAATCGCAGGATTTGTTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAATCCAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |