Detailed information NTG0968908

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACK3BL_RS05030
• Genome accession: NZ_CP176786
• Coordinates: 1035314..1036306 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain XJ23PTE1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1030314..1041306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK3BL_RS05000	ispD	1030375..1031085 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACK3BL_RS05005	ispF	1031085..1031564 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACK3BL_RS05010	truD	1031561..1032610 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACK3BL_RS05015	surE	1032591..1033352 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACK3BL_RS05020	pcm	1033346..1033972 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACK3BL_RS05025	nlpD	1034157..1035251 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACK3BL_RS05030	rpoS	1035314..1036306 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACK3BL_RS05035	ygbN	1036400..1037764 (-)	1365	WP_049254918.1	GntP family transporter	-
ACK3BL_RS05040	ygbM	1037853..1038629 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACK3BL_RS05045	ygbL	1038634..1039272 (-)	639	WP_001278994.1	aldolase	-
ACK3BL_RS05050	otnK	1039269..1040531 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=968908 ACK3BL_RS05030 WP_000081550.1 1035314..1036306(+) (rpoS) [Escherichia coli strain XJ23PTE1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=968908 ACK3BL_RS05030 WP_000081550.1 1035314..1036306(+) (rpoS) [Escherichia coli strain XJ23PTE1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715