Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   OO773_RS06655 Genome accession   NZ_AP026769
Coordinates   1216742..1217944 (-) Length   400 a.a.
NCBI ID   WP_034375657.1    Uniprot ID   -
Organism   Helicobacter suis HS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1211742..1222944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO773_RS06620 - 1211851..1212201 (-) 351 Protein_1296 hypothetical protein -
  OO773_RS06625 - 1212192..1212302 (-) 111 Protein_1297 replication regulatory RepB family protein -
  OO773_RS06630 (HSHS1_13130) - 1212299..1213243 (-) 945 WP_006564526.1 CpaF/VirB11 family protein -
  OO773_RS06635 - 1213248..1213454 (-) 207 Protein_1299 hypothetical protein -
  OO773_RS06640 (HSHS1_13150) - 1213458..1213905 (-) 448 Protein_1300 collagen-like protein -
  OO773_RS06645 (HSHS1_13160) - 1213907..1214497 (-) 591 Protein_1301 hypothetical protein -
  OO773_RS06650 - 1214510..1216758 (-) 2249 Protein_1302 collagen-like protein -
  OO773_RS06655 (HSHS1_13190) comB10 1216742..1217944 (-) 1203 WP_034375657.1 DNA type IV secretion system protein ComB10 Machinery gene
  OO773_RS06660 (HSHS1_13200) - 1217941..1219518 (-) 1578 WP_406600075.1 TrbG/VirB9 family P-type conjugative transfer protein -
  OO773_RS06665 (HSHS1_13210) - 1219538..1219735 (+) 198 WP_264828495.1 hypothetical protein -
  OO773_RS06670 - 1219713..1220552 (-) 840 Protein_1306 VirB8/TrbF family protein -
  OO773_RS06675 - 1220620..1220730 (-) 111 Protein_1307 type IV secretion system protein VirB7 -
  OO773_RS06680 (HSHS1_13240) tnpA 1220796..1221224 (-) 429 WP_034376438.1 IS200/IS605 family transposase -
  OO773_RS06685 (HSHS1_13250) - 1221289..1222554 (+) 1266 WP_073117121.1 RNA-guided endonuclease TnpB family protein -
  OO773_RS06690 - 1222582..1222716 (-) 135 WP_000738747.1 hypothetical protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44822.58 Da        Isoelectric Point: 10.0240

>NTDB_id=96889 OO773_RS06655 WP_034375657.1 1216742..1217944(-) (comB10) [Helicobacter suis HS1]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=96889 OO773_RS06655 WP_034375657.1 1216742..1217944(-) (comB10) [Helicobacter suis HS1]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTTAACATTGCT
TGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATACGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCCAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.181

98.25

0.523

Multiple sequence alignment