Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NYE54_RS22695 Genome accession   NZ_CP150269
Coordinates   5014699..5015652 (-) Length   317 a.a.
NCBI ID   WP_339266342.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL K6-1330     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5009699..5020652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE54_RS22675 (NYE54_22675) - 5010233..5011657 (-) 1425 WP_339266340.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  NYE54_RS22680 (NYE54_22680) - 5011834..5012805 (-) 972 WP_215160276.1 siderophore ABC transporter substrate-binding protein -
  NYE54_RS22685 (NYE54_22685) - 5013007..5013765 (-) 759 WP_076325073.1 ABC transporter ATP-binding protein -
  NYE54_RS22690 (NYE54_22690) - 5013762..5014709 (-) 948 WP_098747217.1 iron chelate uptake ABC transporter family permease subunit -
  NYE54_RS22695 (NYE54_22695) ceuB 5014699..5015652 (-) 954 WP_339266342.1 ABC transporter permease Machinery gene
  NYE54_RS22700 (NYE54_22700) - 5016179..5016781 (+) 603 WP_098747218.1 nitroreductase family protein -
  NYE54_RS22705 (NYE54_22705) - 5017151..5017756 (+) 606 WP_339266344.1 YkoF family thiamine/hydroxymethylpyrimidine-binding protein -
  NYE54_RS22710 (NYE54_22710) - 5017828..5017926 (-) 99 WP_076325078.1 sporulation protein YjcZ -
  NYE54_RS22715 (NYE54_22715) - 5018044..5018742 (-) 699 WP_339266346.1 nucleotidyltransferase domain-containing protein -
  NYE54_RS22720 (NYE54_22720) - 5018890..5019612 (+) 723 WP_076325080.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35000.49 Da        Isoelectric Point: 10.0377

>NTDB_id=968876 NYE54_RS22695 WP_339266342.1 5014699..5015652(-) (ceuB) [Paenibacillus sp. FSL K6-1330]
MKIRYLFAAVVVLSIISLFIGVKDISPLQLFSMTEQQQHIMLVSRIPRLVSLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFTTSGPLIKMLVAFVFALVGTFIFMKILDRIKFKDAIFIPLVGLMFGNIVSSIATFFAYKYDLI
QNMSAWLQGDFSMIMKGQYEMLYISIPLLILAYLFANKFTVAGMGEEFATNLGLHYRRVVNLGLVIVALVTASVVLTVGV
IPFLGLIIPNIVSLYLGDHLKKSLSHTALLGAGFVLFCDILGRIIIYPYEIPISLTVGVLGSGIFIFLLMRRKAYDL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=968876 NYE54_RS22695 WP_339266342.1 5014699..5015652(-) (ceuB) [Paenibacillus sp. FSL K6-1330]
ATGAAGATTAGATACTTATTTGCAGCCGTTGTGGTACTCTCGATAATCTCATTATTTATTGGAGTTAAAGATATCTCGCC
ACTGCAACTGTTCTCGATGACAGAACAACAACAGCATATTATGCTTGTAAGCCGGATTCCTAGGCTTGTCAGTCTTATAT
TGGCGGGTGTCAGCATGAGTATCTGCGGATTGATCATGCAGCAGCTCAGCCGCAATAAGTTCGTATCGCCGACCACGGCA
GGTACGATGGACTCTGCCAGACTGGGGATTTTGGTAGCCATGCTCGTCTTCACGACAAGCGGTCCGCTTATCAAAATGCT
CGTGGCATTTGTATTCGCTCTGGTAGGAACCTTTATCTTCATGAAGATACTGGATCGGATTAAGTTTAAGGATGCGATCT
TCATCCCGCTCGTAGGGCTGATGTTTGGTAATATCGTGAGTTCGATAGCCACCTTCTTTGCATACAAATATGATCTTATT
CAGAATATGTCCGCATGGCTTCAGGGTGATTTTTCCATGATCATGAAGGGCCAGTATGAAATGCTCTATATTAGTATCCC
GCTTTTGATTCTGGCGTATCTGTTCGCCAACAAGTTTACGGTGGCCGGAATGGGAGAGGAGTTTGCAACCAACCTGGGTC
TTCACTACCGGAGAGTTGTGAATCTGGGATTGGTCATCGTGGCGCTGGTTACGGCATCTGTCGTGCTGACGGTCGGCGTG
ATTCCGTTTCTTGGTCTGATCATACCTAATATTGTCAGTTTGTACTTAGGAGACCACTTGAAAAAAAGCCTTTCGCATAC
CGCGCTGCTGGGGGCCGGGTTCGTACTGTTCTGTGACATCCTGGGCCGGATCATTATTTATCCCTATGAAATTCCGATTA
GTCTAACCGTGGGCGTACTCGGAAGCGGTATATTCATTTTCTTACTGATGAGGAGAAAGGCTTATGACTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.603

99.369

0.543

Multiple sequence alignment