Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MHI44_RS17180 Genome accession   NZ_CP150268
Coordinates   3287120..3287698 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus sp. FSL K6-1366     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3282120..3292698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI44_RS17160 (MHI44_17160) hemAT 3282631..3283929 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  MHI44_RS17165 (MHI44_17165) - 3284068..3285597 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  MHI44_RS17170 (MHI44_17170) - 3285709..3286566 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  MHI44_RS17175 (MHI44_17175) - 3286594..3286827 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  MHI44_RS17180 (MHI44_17180) comK 3287120..3287698 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  MHI44_RS17185 (MHI44_17185) - 3287743..3288642 (-) 900 WP_339202478.1 SDR family oxidoreductase -
  MHI44_RS17190 (MHI44_17190) - 3288860..3289129 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  MHI44_RS17195 (MHI44_17195) - 3289173..3290642 (-) 1470 WP_015252422.1 sodium:solute symporter -
  MHI44_RS17200 (MHI44_17200) - 3290639..3290839 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  MHI44_RS17205 (MHI44_17205) - 3291038..3291409 (-) 372 WP_014476361.1 hypothetical protein -
  MHI44_RS17210 (MHI44_17210) - 3291561..3292184 (+) 624 WP_010886465.1 VTT domain-containing protein -
  MHI44_RS17215 (MHI44_17215) lepB 3292186..3292692 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=968841 MHI44_RS17180 WP_003245329.1 3287120..3287698(+) (comK) [Bacillus sp. FSL K6-1366]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=968841 MHI44_RS17180 WP_003245329.1 3287120..3287698(+) (comK) [Bacillus sp. FSL K6-1366]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment