Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   OO773_RS02490 Genome accession   NZ_AP026769
Coordinates   443866..444132 (-) Length   88 a.a.
NCBI ID   WP_034376157.1    Uniprot ID   A0A6J4CZW2
Organism   Helicobacter suis HS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438866..449132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO773_RS02470 (HSHS1_04870) - 439672..441978 (-) 2307 WP_232087246.1 TonB-dependent receptor family protein -
  OO773_RS02475 (HSHS1_04880) fliW 442122..442529 (+) 408 WP_006564742.1 flagellar assembly protein FliW -
  OO773_RS02480 (HSHS1_04890) murG 442531..443613 (+) 1083 WP_006564743.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  OO773_RS02485 (HSHS1_04900) comB3 443596..443865 (-) 270 WP_034376154.1 hypothetical protein Machinery gene
  OO773_RS02490 (HSHS1_04910) comB2 443866..444132 (-) 267 WP_034376157.1 TrbC/VirB2 family protein Machinery gene
  OO773_RS02495 (HSHS1_04920) - 444426..445211 (+) 786 WP_006564744.1 HrcA family transcriptional regulator -
  OO773_RS02500 (HSHS1_04930) grpE 445208..445738 (+) 531 WP_006564745.1 nucleotide exchange factor GrpE -
  OO773_RS02505 (HSHS1_04940) dnaK 445760..447625 (+) 1866 WP_040499279.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10204.24 Da        Isoelectric Point: 7.9878

>NTDB_id=96884 OO773_RS02490 WP_034376157.1 443866..444132(-) (comB2) [Helicobacter suis HS1]
MRFLWVFCVVFALLRAEGSDSFFQAIEEQLQSNTAKGILMVIFIGIAFYVWRNLDRWRDILFTVLGVVLGIMLFFKAPAL
ASWFMGLF

Nucleotide


Download         Length: 267 bp        

>NTDB_id=96884 OO773_RS02490 WP_034376157.1 443866..444132(-) (comB2) [Helicobacter suis HS1]
GTGCGGTTTTTATGGGTTTTTTGTGTGGTTTTTGCCCTTTTAAGGGCTGAGGGGAGCGATAGTTTTTTTCAAGCCATTGA
AGAACAACTCCAAAGCAATACGGCTAAGGGTATTTTAATGGTGATCTTTATTGGCATTGCCTTTTATGTGTGGCGCAATT
TAGATCGCTGGCGGGATATTTTATTCACGGTCTTAGGCGTAGTTTTGGGAATCATGCTTTTTTTCAAAGCCCCCGCTTTA
GCTTCGTGGTTTATGGGACTCTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(17-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CZW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

74.667

85.227

0.636

Multiple sequence alignment