Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | OO773_RS02485 | Genome accession | NZ_AP026769 |
| Coordinates | 443596..443865 (-) | Length | 89 a.a. |
| NCBI ID | WP_034376154.1 | Uniprot ID | A0A6J4CZS1 |
| Organism | Helicobacter suis HS1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 438596..448865
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO773_RS02470 (HSHS1_04870) | - | 439672..441978 (-) | 2307 | WP_232087246.1 | TonB-dependent receptor family protein | - |
| OO773_RS02475 (HSHS1_04880) | fliW | 442122..442529 (+) | 408 | WP_006564742.1 | flagellar assembly protein FliW | - |
| OO773_RS02480 (HSHS1_04890) | murG | 442531..443613 (+) | 1083 | WP_006564743.1 | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | - |
| OO773_RS02485 (HSHS1_04900) | comB3 | 443596..443865 (-) | 270 | WP_034376154.1 | hypothetical protein | Machinery gene |
| OO773_RS02490 (HSHS1_04910) | comB2 | 443866..444132 (-) | 267 | WP_034376157.1 | TrbC/VirB2 family protein | Machinery gene |
| OO773_RS02495 (HSHS1_04920) | - | 444426..445211 (+) | 786 | WP_006564744.1 | HrcA family transcriptional regulator | - |
| OO773_RS02500 (HSHS1_04930) | grpE | 445208..445738 (+) | 531 | WP_006564745.1 | nucleotide exchange factor GrpE | - |
| OO773_RS02505 (HSHS1_04940) | dnaK | 445760..447625 (+) | 1866 | WP_040499279.1 | molecular chaperone DnaK | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10325.31 Da Isoelectric Point: 7.9966
>NTDB_id=96883 OO773_RS02485 WP_034376154.1 443596..443865(-) (comB3) [Helicobacter suis HS1]
MHYPLLVVSVPNLKEISTKEKFLWLNAKSWIVSIFIPFICWPWLGTLATLFFYAGFLLLFSVLEFFDEDIADILIARSKL
KTKASSFYA
MHYPLLVVSVPNLKEISTKEKFLWLNAKSWIVSIFIPFICWPWLGTLATLFFYAGFLLLFSVLEFFDEDIADILIARSKL
KTKASSFYA
Nucleotide
Download Length: 270 bp
>NTDB_id=96883 OO773_RS02485 WP_034376154.1 443596..443865(-) (comB3) [Helicobacter suis HS1]
ATGCATTATCCCTTATTAGTGGTTTCTGTCCCTAATCTTAAAGAGATTTCTACCAAAGAAAAATTTCTCTGGCTCAATGC
TAAATCATGGATTGTCTCTATTTTTATCCCTTTTATATGCTGGCCATGGCTTGGTACTCTAGCGACGCTATTTTTTTATG
CGGGTTTTTTATTGCTCTTTAGCGTGTTAGAGTTTTTTGATGAAGACATTGCTGATATTTTAATTGCTCGCTCTAAACTT
AAGACAAAAGCTTCAAGCTTTTACGCCTGA
ATGCATTATCCCTTATTAGTGGTTTCTGTCCCTAATCTTAAAGAGATTTCTACCAAAGAAAAATTTCTCTGGCTCAATGC
TAAATCATGGATTGTCTCTATTTTTATCCCTTTTATATGCTGGCCATGGCTTGGTACTCTAGCGACGCTATTTTTTTATG
CGGGTTTTTTATTGCTCTTTAGCGTGTTAGAGTTTTTTGATGAAGACATTGCTGATATTTTAATTGCTCGCTCTAAACTT
AAGACAAAAGCTTCAAGCTTTTACGCCTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
62.353 |
95.506 |
0.596 |