Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MHI44_RS11545 Genome accession   NZ_CP150268
Coordinates   2200948..2202060 (+) Length   370 a.a.
NCBI ID   WP_339201978.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1366     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2195948..2207060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI44_RS11520 (MHI44_11520) rnpA 2196658..2197008 (-) 351 WP_003242628.1 ribonuclease P protein component -
  MHI44_RS11525 (MHI44_11525) rpmH 2197160..2197294 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  MHI44_RS11530 (MHI44_11530) dnaA 2197921..2199261 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  MHI44_RS11535 (MHI44_11535) dnaN 2199450..2200586 (+) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  MHI44_RS11540 (MHI44_11540) rlbA 2200717..2200932 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  MHI44_RS11545 (MHI44_11545) recF 2200948..2202060 (+) 1113 WP_339201978.1 DNA replication/repair protein RecF Machinery gene
  MHI44_RS11550 (MHI44_11550) remB 2202078..2202323 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  MHI44_RS11555 (MHI44_11555) gyrB 2202378..2204294 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MHI44_RS11560 (MHI44_11560) gyrA 2204505..2206970 (+) 2466 WP_014475555.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42320.38 Da        Isoelectric Point: 7.3660

>NTDB_id=968823 MHI44_RS11545 WP_339201978.1 2200948..2202060(+) (recF) [Bacillus sp. FSL K6-1366]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSLVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=968823 MHI44_RS11545 WP_339201978.1 2200948..2202060(+) (recF) [Bacillus sp. FSL K6-1366]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCTCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997

Multiple sequence alignment