Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MHI44_RS04610 Genome accession   NZ_CP150268
Coordinates   837841..838587 (-) Length   248 a.a.
NCBI ID   WP_339202980.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1366     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832841..843587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI44_RS04585 (MHI44_04585) mreC 833247..834119 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  MHI44_RS04590 (MHI44_04590) mreB 834150..835163 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  MHI44_RS04595 (MHI44_04595) radC 835255..835950 (-) 696 WP_339202978.1 DNA repair protein RadC -
  MHI44_RS04600 (MHI44_04600) - 835987..836556 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  MHI44_RS04605 (MHI44_04605) spoIIB 836709..837707 (-) 999 WP_181217306.1 stage II sporulation protein SpoIIB -
  MHI44_RS04610 (MHI44_04610) comC 837841..838587 (-) 747 WP_339202980.1 A24 family peptidase Machinery gene
  MHI44_RS04615 (MHI44_04615) - 838727..840019 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MHI44_RS04620 (MHI44_04620) valS 840079..842721 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  MHI44_RS04625 (MHI44_04625) - 843169..843360 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26522.12 Da        Isoelectric Point: 9.9495

>NTDB_id=968803 MHI44_RS04610 WP_339202980.1 837841..838587(-) (comC) [Bacillus sp. FSL K6-1366]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGRGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=968803 MHI44_RS04610 WP_339202980.1 837841..838587(-) (comC) [Bacillus sp. FSL K6-1366]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGAGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTAACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment