Detailed information NTG0968802

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J215_RS07470
• Genome accession: NZ_CP176783
• Coordinates: 1583518..1584522 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain J215
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1578518..1589522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J215_RS07440 (J215_001460)	fghA	1578610..1579461 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
J215_RS07445 (J215_001461)	ispF	1579532..1580005 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J215_RS07450 (J215_001462)	truD	1580002..1581069 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
J215_RS07455 (J215_001463)	surE	1581057..1581806 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
J215_RS07460 (J215_001464)	-	1581839..1582474 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J215_RS07465 (J215_001465)	-	1582520..1583413 (+)	894	WP_010791885.1	peptidoglycan DD-metalloendopeptidase family protein	-
J215_RS07470 (J215_001466)	rpoS	1583518..1584522 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
J215_RS07475 (J215_001467)	fdxA	1584949..1585272 (-)	324	WP_003119354.1	ferredoxin FdxA	-
J215_RS07480 (J215_001468)	mutS	1585339..1587906 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
J215_RS07485 (J215_001469)	-	1588032..1589039 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=968802 J215_RS07470 WP_003113871.1 1583518..1584522(+) (rpoS) [Pseudomonas aeruginosa strain J215]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=968802 J215_RS07470 WP_003113871.1 1583518..1584522(+) (rpoS) [Pseudomonas aeruginosa strain J215]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653