Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | OO773_RS01580 | Genome accession | NZ_AP026769 |
| Coordinates | 269233..269496 (+) | Length | 87 a.a. |
| NCBI ID | WP_034375715.1 | Uniprot ID | - |
| Organism | Helicobacter suis HS1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 264233..274496
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO773_RS01555 (HSHS1_03080) | - | 264443..265843 (-) | 1401 | WP_006564105.1 | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | - |
| OO773_RS01560 (HSHS1_03090) | - | 265982..267157 (+) | 1176 | WP_006564106.1 | site-specific DNA-methyltransferase | - |
| OO773_RS01565 (HSHS1_03100) | - | 267144..268010 (+) | 867 | WP_006564107.1 | CfrBI family restriction endonuclease | - |
| OO773_RS01570 (HSHS1_03110) | - | 268180..268950 (+) | 771 | WP_034375711.1 | hypothetical protein | - |
| OO773_RS01575 (HSHS1_03120) | comB2 | 268983..269222 (+) | 240 | WP_050780158.1 | TrbC/VirB2 family protein | Machinery gene |
| OO773_RS01580 (HSHS1_03130) | comB3 | 269233..269496 (+) | 264 | WP_034375715.1 | hypothetical protein | Machinery gene |
| OO773_RS01585 (HSHS1_03140) | - | 269516..269836 (+) | 321 | WP_034375717.1 | hypothetical protein | - |
| OO773_RS01590 (HSHS1_03150) | comB4 | 269849..272284 (+) | 2436 | WP_034375719.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| OO773_RS09790 (HSHS1_03160) | - | 272289..272498 (+) | 210 | WP_141556969.1 | hypothetical protein | - |
| OO773_RS01600 (HSHS1_03170) | - | 272508..273599 (+) | 1092 | WP_050780156.1 | VirB8/TrbF family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9910.98 Da Isoelectric Point: 8.9498
>NTDB_id=96880 OO773_RS01580 WP_034375715.1 269233..269496(+) (comB3) [Helicobacter suis HS1]
MQVVQVSVPNLREISSKEKFLWLNAKSFLICLLVPFVLLPTIGVLYALLLYGVLLLVFSILEFFDEDISDILVARSKIKT
KSTKFYA
MQVVQVSVPNLREISSKEKFLWLNAKSFLICLLVPFVLLPTIGVLYALLLYGVLLLVFSILEFFDEDISDILVARSKIKT
KSTKFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=96880 OO773_RS01580 WP_034375715.1 269233..269496(+) (comB3) [Helicobacter suis HS1]
ATGCAAGTTGTGCAGGTGAGTGTGCCTAATCTAAGAGAAATCTCTAGCAAAGAAAAATTCTTATGGCTCAATGCCAAAAG
TTTTTTAATCTGCTTGCTTGTGCCCTTCGTGTTACTACCCACTATTGGAGTCTTATATGCCTTGCTGCTCTATGGTGTGC
TTTTATTAGTGTTTAGCATTTTAGAATTTTTTGATGAAGACATTAGCGATATTCTAGTTGCGCGCTCTAAAATCAAAACT
AAGAGCACAAAATTTTATGCGTGA
ATGCAAGTTGTGCAGGTGAGTGTGCCTAATCTAAGAGAAATCTCTAGCAAAGAAAAATTCTTATGGCTCAATGCCAAAAG
TTTTTTAATCTGCTTGCTTGTGCCCTTCGTGTTACTACCCACTATTGGAGTCTTATATGCCTTGCTGCTCTATGGTGTGC
TTTTATTAGTGTTTAGCATTTTAGAATTTTTTGATGAAGACATTAGCGATATTCTAGTTGCGCGCTCTAAAATCAAAACT
AAGAGCACAAAATTTTATGCGTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
63.218 |
100 |
0.632 |