Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NZ043_RS07040 Genome accession   NZ_CP150267
Coordinates   1606302..1607255 (-) Length   317 a.a.
NCBI ID   WP_091036063.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL k6-2145     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601302..1612255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZ043_RS07020 (NZ043_07020) - 1601785..1603380 (-) 1596 WP_091036071.1 spore germination protein -
  NZ043_RS07025 (NZ043_07025) - 1603556..1604542 (-) 987 WP_091036068.1 siderophore ABC transporter substrate-binding protein -
  NZ043_RS07030 (NZ043_07030) - 1604585..1605343 (-) 759 WP_339311184.1 ABC transporter ATP-binding protein -
  NZ043_RS07035 (NZ043_07035) - 1605337..1606305 (-) 969 WP_276324002.1 iron chelate uptake ABC transporter family permease subunit -
  NZ043_RS07040 (NZ043_07040) ceuB 1606302..1607255 (-) 954 WP_091036063.1 ABC transporter permease Machinery gene
  NZ043_RS07045 (NZ043_07045) - 1607503..1607838 (-) 336 WP_091036061.1 hypothetical protein -
  NZ043_RS07050 (NZ043_07050) - 1607883..1608584 (-) 702 WP_133386155.1 pirin family protein -
  NZ043_RS07055 (NZ043_07055) - 1608784..1609197 (-) 414 WP_091036057.1 DoxX family protein -
  NZ043_RS07060 (NZ043_07060) - 1609248..1610108 (-) 861 WP_036667841.1 M56 family metallopeptidase -
  NZ043_RS07065 (NZ043_07065) - 1610110..1610526 (-) 417 WP_091036054.1 BlaI/MecI/CopY family transcriptional regulator -
  NZ043_RS07070 (NZ043_07070) - 1610736..1612199 (-) 1464 WP_133386157.1 catalase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35008.16 Da        Isoelectric Point: 10.0976

>NTDB_id=968767 NZ043_RS07040 WP_091036063.1 1606302..1607255(-) (ceuB) [Paenibacillus sp. FSL k6-2145]
MKLRYMLIVLAVLSIVYIFIGNSDISPLDIFHLSSVQLQVLQVSRFPRLISILVAGISMSVIGLIMQQLTRNRFVSPTTA
GTMDSARLGILVTLMWFPGASPLQKMLVAFAFALAGTLIFMRILEKVKFKDTIYIALLGLMFGNIVSSVTTFFAYKNDLI
QNISSWLQGDFSTIMKGRYELIYISIPLLIIVYLFANRFTLAGMGEDFSTNLGLAYRRVVNIGLILVAMVSAVVIITVGT
IPFLGLVVPNIVTLYKGDNLRDTLPHTAVLGAIFVLVCDILGQLIIYPYQLSISLTVGVVGSVLFLYLLLRRKAYGS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=968767 NZ043_RS07040 WP_091036063.1 1606302..1607255(-) (ceuB) [Paenibacillus sp. FSL k6-2145]
ATGAAGTTACGTTATATGTTGATCGTACTGGCTGTACTGTCTATCGTATACATATTTATTGGAAATTCAGACATTTCACC
ATTGGATATATTTCATTTGTCCTCAGTCCAGCTACAGGTATTACAAGTTAGCCGGTTTCCCCGCCTGATCAGCATCCTTG
TCGCCGGAATCAGCATGAGTGTAATCGGACTGATTATGCAGCAGCTGACACGCAACCGATTCGTTTCCCCAACTACAGCA
GGAACGATGGATTCAGCCAGATTGGGTATTCTTGTGACGTTAATGTGGTTCCCGGGAGCATCCCCTCTGCAAAAAATGTT
GGTCGCTTTTGCCTTTGCTCTGGCGGGAACACTGATTTTTATGCGAATTCTGGAGAAAGTTAAGTTCAAGGATACGATAT
ATATCGCTCTGCTAGGTCTTATGTTTGGCAACATTGTAAGCTCCGTCACGACATTTTTTGCTTACAAAAACGATCTGATC
CAGAACATCTCGTCTTGGTTACAGGGTGACTTCTCCACCATCATGAAGGGACGTTATGAACTGATCTATATCAGTATTCC
GTTGCTCATTATTGTGTACCTGTTCGCTAATCGTTTTACACTTGCAGGAATGGGCGAAGATTTCTCAACCAACCTTGGAC
TGGCGTATCGACGAGTTGTGAATATCGGCCTGATCCTGGTGGCGATGGTTTCAGCAGTAGTGATTATTACTGTAGGTACA
ATTCCGTTTCTGGGCCTTGTCGTGCCAAATATCGTAACACTGTACAAAGGGGATAACTTACGTGATACATTGCCTCATAC
GGCAGTGCTTGGTGCGATCTTTGTTCTGGTCTGCGATATTCTGGGTCAATTAATTATTTATCCTTATCAACTTTCGATCA
GTCTGACGGTGGGAGTTGTGGGAAGTGTATTATTCCTGTATTTACTGCTTCGAAGAAAGGCTTATGGATCATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.633

99.685

0.505

Multiple sequence alignment