Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OO778_RS18645 Genome accession   NZ_AP026766
Coordinates   471683..472780 (-) Length   365 a.a.
NCBI ID   WP_005397733.1    Uniprot ID   A0AA92R960
Organism   Vibrio sp. STUT-A16     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 466683..477780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS18630 (VspSTUT16_35280) - 467255..468313 (-) 1059 WP_264912403.1 HlyD family secretion protein -
  OO778_RS18635 (VspSTUT16_35290) - 468349..468804 (-) 456 WP_005397727.1 MarR family transcriptional regulator -
  OO778_RS18640 (VspSTUT16_35300) luxQ 469107..471683 (-) 2577 WP_005397731.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OO778_RS18645 (VspSTUT16_35310) luxP 471683..472780 (-) 1098 WP_005397733.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OO778_RS18650 (VspSTUT16_35320) - 473101..473421 (-) 321 WP_012842363.1 GIY-YIG nuclease family protein -
  OO778_RS18655 (VspSTUT16_35330) - 473418..474068 (-) 651 WP_152815489.1 YceH family protein -
  OO778_RS18660 (VspSTUT16_35340) - 474234..474437 (-) 204 WP_031780656.1 hypothetical protein -
  OO778_RS18665 (VspSTUT16_35350) - 474679..474993 (+) 315 WP_005373603.1 DUF496 family protein -
  OO778_RS18670 (VspSTUT16_35360) - 475115..476452 (+) 1338 WP_065646232.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41598.94 Da        Isoelectric Point: 4.9826

>NTDB_id=96875 OO778_RS18645 WP_005397733.1 471683..472780(-) (luxP) [Vibrio sp. STUT-A16]
MKKALVFSLMSMATVAPIAQATQVLNGYWAYQEFLDQFPEQKQLTNALADAVRETPVPVERDKKRPLKISVVYPGQQISD
YWIRNIDAFEQRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEDHQPFLYVGFDHAEGSRELAVEFGKRFPKQSHYSVLYFSEGYISDIRGNTFINQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGREDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=96875 OO778_RS18645 WP_005397733.1 471683..472780(-) (luxP) [Vibrio sp. STUT-A16]
ATGAAAAAAGCGTTAGTATTCTCCCTGATGTCAATGGCCACTGTCGCGCCGATAGCGCAAGCCACTCAAGTCCTCAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCAGAACAGAAGCAGTTAACGAATGCGTTGGCTGACGCCGTGCGAG
AGACTCCTGTTCCGGTTGAAAGAGACAAAAAGCGTCCGTTAAAAATTTCTGTGGTTTATCCAGGTCAACAGATTTCGGAT
TATTGGATTCGAAATATTGACGCATTTGAACAGCGTTTAGATAAACTCGATATCGACTATCAACTTAATCAAGTATTTAC
CCGTCCCAACGCAGATATTAAGCAACAAAGTTTGTCTTTAATGGAAGCGCTGAAGAGCAACTCCGATTATCTGATTTTCA
CTCTCGATACCACTAGGCATCGTAAGTTTGTTGAACACGTCTTAGACTCAAAGAAAACCAAGTTGATCTTACAAAATATC
ACTACACCGGTAAGAGATTGGGAGGATCACCAACCGTTCCTTTATGTTGGTTTTGATCATGCTGAAGGCAGCCGTGAGCT
TGCCGTGGAGTTTGGTAAGCGTTTTCCAAAACAGAGCCATTATAGTGTGCTCTACTTTTCAGAAGGATATATCAGCGATA
TCAGAGGCAATACCTTTATCAATCAAGTCAACCGTGATAACAACTTTGAACTACAATCTGCTTACTATACCAAAGCGACA
AAGCAGTCTGGGTATGAAGCAGCAAAAGCGAGTTTGGAAAAATACCCTGACGTCGATTTTATTTATGCGTGTTCTACAGA
TGTGGCGCTAGGGGCTGTTGATGCGCTGAAAGAATTAGGGCGTGAAGATGTCATGATCAACGGCTGGGGTGGCGGCTCTG
CAGAATTAGAAGCGCTTTCGAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACTGGCATTGCAATGGCA
GAAGCGATTAAGTGGGATCTTGAAGGGAAACCCGTTCCAACCGTTTATTCTGGTGATTTTGAAGTCGTCACGAAATCTGA
TTCTCCAGAAAGAATTGAAGCATTAAGAAAACGCGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment