Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OO778_RS17545 Genome accession   NZ_AP026766
Coordinates   190982..192163 (+) Length   393 a.a.
NCBI ID   WP_074190597.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 185982..197163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS17525 (VspSTUT16_33030) - 186342..187703 (-) 1362 WP_264912285.1 GGDEF domain-containing protein -
  OO778_RS17530 (VspSTUT16_33040) - 187710..187859 (-) 150 WP_048624969.1 hypothetical protein -
  OO778_RS17535 (VspSTUT16_33060) - 187864..189019 (-) 1156 Protein_171 EAL domain-containing response regulator -
  OO778_RS17540 (VspSTUT16_33070) ylqF 189698..190642 (+) 945 WP_005395264.1 ribosome biogenesis GTPase YlqF -
  OO778_RS17545 (VspSTUT16_33080) cqsA 190982..192163 (+) 1182 WP_074190597.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OO778_RS17550 (VspSTUT16_33090) cqsS 192266..194311 (-) 2046 WP_074190596.1 hybrid sensor histidine kinase/response regulator Regulator
  OO778_RS17555 (VspSTUT16_33100) - 194680..195297 (+) 618 WP_074190595.1 HAD family phosphatase -
  OO778_RS17560 (VspSTUT16_33110) - 195384..195932 (-) 549 WP_005398196.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43693.98 Da        Isoelectric Point: 6.2260

>NTDB_id=96873 OO778_RS17545 WP_074190597.1 190982..192163(+) (cqsA) [Vibrio sp. STUT-A16]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPTCNAIVMQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=96873 OO778_RS17545 WP_074190597.1 190982..192163(+) (cqsA) [Vibrio sp. STUT-A16]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATTCAAGATCTAATTGA
ACCGAACGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCAACGTGTAATGCCATTGTTATGCAAAGCAATGATTACC
TTGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAATCAAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCAGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGTGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTGCGAAAACAGATTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTCCGCAAGGCGCGGGGCTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGTGCAGAAAAGCTGGCTAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGCTCCACCGTGTTACCGCAAGAAATTATTCGGTTAGAAAAAACACTGGACGTCATAAAAAAAGCCGATGACAAGC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTCTAGAAGAAAGGAATGTCTTTGGCGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCACGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.881

98.473

0.57

Multiple sequence alignment