Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MHH68_RS07860 Genome accession   NZ_CP150266
Coordinates   1579084..1579986 (+) Length   300 a.a.
NCBI ID   WP_058014001.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2841     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1574084..1584986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH68_RS07840 (MHH68_07840) - 1574760..1576496 (+) 1737 WP_339165710.1 glycosyltransferase -
  MHH68_RS07845 (MHH68_07845) - 1576493..1576768 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  MHH68_RS07850 (MHH68_07850) sucC 1576935..1578095 (+) 1161 WP_144462060.1 ADP-forming succinate--CoA ligase subunit beta -
  MHH68_RS07855 (MHH68_07855) sucD 1578118..1579020 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  MHH68_RS07860 (MHH68_07860) dprA 1579084..1579986 (+) 903 WP_058014001.1 DNA-processing protein DprA Machinery gene
  MHH68_RS07865 (MHH68_07865) topA 1580180..1582255 (+) 2076 WP_058014000.1 type I DNA topoisomerase -
  MHH68_RS07870 (MHH68_07870) trmFO 1582326..1583630 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHH68_RS07875 (MHH68_07875) xerC 1583693..1584610 (+) 918 WP_339165711.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34034.36 Da        Isoelectric Point: 8.5942

>NTDB_id=968724 MHH68_RS07860 WP_058014001.1 1579084..1579986(+) (dprA) [Bacillus sp. FSL K6-2841]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGIAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPAKLIQQGAKLVHSTKDILEEFSFRGVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=968724 MHH68_RS07860 WP_058014001.1 1579084..1579986(+) (dprA) [Bacillus sp. FSL K6-2841]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGAATTGCACAT
AAAGAATGCATTAGGAATAAAGGGAAAACGATTGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTGTCTGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TCCCTTTGAGGAATCGCTTAATTAGTGCGCTAACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACTGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAAACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCGGTG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.236

96

0.377

Multiple sequence alignment