Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MHH68_RS07020 Genome accession   NZ_CP150266
Coordinates   1413244..1413522 (+) Length   92 a.a.
NCBI ID   WP_012009813.1    Uniprot ID   A8FCR0
Organism   Bacillus sp. FSL K6-2841     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408244..1418522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH68_RS06995 (MHH68_06995) - 1408336..1408611 (-) 276 WP_034619939.1 hypothetical protein -
  MHH68_RS07000 (MHH68_07000) - 1408755..1410374 (+) 1620 WP_003212114.1 ATP-binding cassette domain-containing protein -
  MHH68_RS07005 (MHH68_07005) - 1410413..1411645 (-) 1233 WP_306012091.1 aminopeptidase -
  MHH68_RS07010 (MHH68_07010) - 1411754..1411885 (-) 132 WP_003210922.1 protein YkpC -
  MHH68_RS07015 (MHH68_07015) mreBH 1411960..1412967 (-) 1008 WP_012009812.1 rod-share determining protein MreBH -
  MHH68_RS07020 (MHH68_07020) abrB 1413244..1413522 (+) 279 WP_012009813.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MHH68_RS07025 (MHH68_07025) - 1413665..1414975 (+) 1311 WP_061407655.1 ATP-binding protein -
  MHH68_RS07030 (MHH68_07030) - 1414980..1415816 (+) 837 WP_339165667.1 gamma-glutamylcyclotransferase -
  MHH68_RS07035 (MHH68_07035) - 1415854..1416522 (+) 669 WP_012009816.1 TrkA family potassium uptake protein -
  MHH68_RS07040 (MHH68_07040) ade 1416784..1418514 (+) 1731 WP_339165668.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10291.94 Da        Isoelectric Point: 4.5216

>NTDB_id=968723 MHH68_RS07020 WP_012009813.1 1413244..1413522(+) (abrB) [Bacillus sp. FSL K6-2841]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=968723 MHH68_RS07020 WP_012009813.1 1413244..1413522(+) (abrB) [Bacillus sp. FSL K6-2841]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAGGACAGTATGGAATTTTTTATAGATGGGGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGAGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
TTACTGTTAAAAGAACTTCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment