Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MHH68_RS00020 Genome accession   NZ_CP150266
Coordinates   3057..4169 (+) Length   370 a.a.
NCBI ID   WP_058013177.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2841     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH68_RS00005 (MHH68_00005) dnaA 1..1341 (+) 1341 WP_058013178.1 chromosomal replication initiator protein DnaA -
  MHH68_RS00010 (MHH68_00010) dnaN 1538..2674 (+) 1137 WP_041815072.1 DNA polymerase III subunit beta -
  MHH68_RS00015 (MHH68_00015) yaaA 2825..3040 (+) 216 WP_041815077.1 S4 domain-containing protein YaaA -
  MHH68_RS00020 (MHH68_00020) recF 3057..4169 (+) 1113 WP_058013177.1 DNA replication/repair protein RecF Machinery gene
  MHH68_RS00025 (MHH68_00025) - 4187..4432 (+) 246 WP_061406453.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  MHH68_RS00030 (MHH68_00030) gyrB 4490..6406 (+) 1917 WP_058013868.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MHH68_RS00035 (MHH68_00035) gyrA 6635..9136 (+) 2502 WP_339164666.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42573.62 Da        Isoelectric Point: 7.3663

>NTDB_id=968699 MHH68_RS00020 WP_058013177.1 3057..4169(+) (recF) [Bacillus sp. FSL K6-2841]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRRQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=968699 MHH68_RS00020 WP_058013177.1 3057..4169(+) (recF) [Bacillus sp. FSL K6-2841]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCAATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCCAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGCTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTAAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGG
AATCATTACTTGAAACAACTGCAGACAAGAAGGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCAGCTGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGTTGCATTTTGGCA
TATCTAGAGAGCTAGAAACACTCACGCTCCAATACCAAACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGTTGTGGGGACCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACTTGATACACGAAGAAATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832

Multiple sequence alignment