Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MHH56_RS24715 Genome accession   NZ_CP150265
Coordinates   5611550..5613313 (-) Length   587 a.a.
NCBI ID   WP_339204313.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL K6-3182     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5606550..5618313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH56_RS24710 (MHH56_24710) rcrQ 5609770..5611506 (-) 1737 WP_339209723.1 ABC transporter ATP-binding protein Regulator
  MHH56_RS24715 (MHH56_24715) rcrP 5611550..5613313 (-) 1764 WP_339204313.1 ABC transporter ATP-binding protein Regulator
  MHH56_RS24720 (MHH56_24720) - 5613408..5613842 (-) 435 WP_339204315.1 MarR family transcriptional regulator -
  MHH56_RS24725 (MHH56_24725) - 5614016..5615092 (-) 1077 WP_339204316.1 hypothetical protein -
  MHH56_RS24730 (MHH56_24730) - 5615052..5616686 (-) 1635 WP_339204317.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  MHH56_RS24735 (MHH56_24735) - 5616730..5617755 (-) 1026 WP_339204318.1 zinc-binding dehydrogenase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64652.27 Da        Isoelectric Point: 8.9168

>NTDB_id=968689 MHH56_RS24715 WP_339204313.1 5611550..5613313(-) (rcrP) [Paenibacillus sp. FSL K6-3182]
MLKILKYFNPKNVWFIVISTAFIVFQVWLDLKLPDYLAEITKLVQTEGSSLNEVWEPGAYMMLCAIGSLIASFIVVYLVA
KSAASLAKRLRSLLFDKVESFSMAEMNQFSTASLITRSTNDITQVQTIVAMGLQVMIKAPILAGWAIVKISSKSWQWTLS
SGISVALLLLMIAIVILFAMPKFRMIQGLTDQLNRVTREGLQGLRVIRAYNAGPSQEAKFEFANRELTDANLFTSRLMAL
MMPVMSLIMSGLSLAIYWIGAYLINGADTAARLGLFSDMVIFSSYAMQIVMAFMMLSMVFFMLPRASVAAKRVMEVLNTE
PSIKDGSAKSTNAAKAGEIEFRNVSFKYADSDEYVLRDISFVARRGETVAFIGSTGSGKSTMMNLIPRFYDVTDGEVLVA
GMNVKDYSLKDLHNKLGYVPQKAVLFSGTVTSNVAYGDNGHVAGSADDVKKAVAIAKGQEFVEKLEGGYEGTISQGGSNL
SGGQKQRLSIARAIYRKPDIYIFDDSFSALDYKTDRQLRSMLNQETAGATNLIVGQRIGTIKEADLILVLDEGKIVGRGT
HQELLQTCEVYRQIANSQLSKEELEIG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=968689 MHH56_RS24715 WP_339204313.1 5611550..5613313(-) (rcrP) [Paenibacillus sp. FSL K6-3182]
ATGCTTAAGATTTTGAAGTATTTCAATCCCAAAAATGTTTGGTTTATCGTCATCAGTACTGCATTTATCGTGTTCCAGGT
ATGGCTCGATCTCAAGCTTCCCGATTATTTGGCAGAAATCACAAAGCTGGTGCAGACGGAAGGCAGCTCCTTAAACGAGG
TATGGGAGCCAGGCGCCTATATGATGCTGTGTGCCATTGGAAGCTTAATTGCATCCTTCATCGTTGTTTATTTGGTCGCG
AAGAGCGCTGCATCGCTCGCTAAGAGGCTTAGAAGCCTGCTCTTCGACAAGGTTGAATCATTCTCCATGGCCGAGATGAA
TCAATTTTCAACAGCAAGCCTCATTACGCGTTCCACGAACGATATTACGCAAGTACAAACGATTGTGGCGATGGGGCTGC
AGGTCATGATTAAAGCGCCTATTCTGGCAGGCTGGGCAATTGTGAAAATCTCAAGCAAGAGCTGGCAATGGACGCTCTCG
TCCGGTATTTCGGTTGCACTGCTTCTTCTCATGATCGCGATCGTTATTTTGTTCGCCATGCCGAAGTTCAGAATGATTCA
AGGACTAACGGATCAACTGAACCGAGTAACGAGAGAAGGGCTTCAAGGTCTGCGAGTCATTCGTGCTTATAATGCTGGAC
CAAGCCAAGAAGCAAAGTTCGAGTTCGCAAATCGGGAGTTAACCGATGCGAATCTATTCACAAGCCGATTAATGGCATTA
ATGATGCCGGTCATGAGCTTAATTATGAGCGGATTAAGCTTGGCGATTTATTGGATCGGAGCGTATCTGATTAATGGAGC
GGATACAGCAGCTAGATTAGGCTTATTCAGCGACATGGTCATTTTCTCGTCTTATGCCATGCAGATCGTCATGGCCTTTA
TGATGCTGTCGATGGTTTTCTTCATGCTTCCGCGGGCGTCGGTTGCTGCCAAGCGTGTCATGGAAGTATTAAATACAGAA
CCAAGCATCAAGGATGGCAGTGCGAAATCAACTAATGCTGCGAAAGCAGGAGAGATTGAATTCCGGAATGTCAGCTTCAA
GTATGCGGATTCGGATGAATATGTACTTAGGGATATCAGCTTCGTTGCACGCAGGGGAGAGACGGTTGCGTTTATCGGCT
CCACGGGTAGCGGCAAGAGTACAATGATGAACTTAATTCCAAGATTTTACGATGTGACGGACGGCGAAGTGCTTGTTGCG
GGAATGAATGTGAAGGATTACTCACTGAAAGATCTGCATAACAAGCTTGGCTATGTTCCTCAGAAAGCCGTATTGTTCAG
CGGAACAGTGACGTCCAACGTCGCTTATGGTGATAATGGGCATGTGGCTGGCTCGGCGGACGATGTGAAGAAAGCGGTAG
CGATCGCTAAGGGACAAGAGTTTGTCGAGAAGCTAGAAGGCGGGTATGAGGGCACTATCTCGCAAGGCGGCTCGAATTTG
TCTGGCGGACAGAAGCAGCGGTTATCCATCGCTAGGGCTATCTACCGTAAGCCTGACATTTATATTTTTGACGACTCCTT
CTCTGCGCTTGATTACAAAACCGACCGCCAGCTGCGTTCCATGTTGAATCAAGAAACAGCTGGAGCTACCAACCTAATTG
TGGGGCAGCGAATCGGAACTATTAAGGAAGCCGATCTCATACTCGTTCTAGACGAAGGCAAAATTGTAGGAAGAGGCACG
CATCAAGAGCTGCTTCAAACCTGCGAGGTATATCGTCAGATCGCGAACTCTCAGTTATCGAAGGAGGAGCTTGAAATTGG
CTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.248

100

0.525

Multiple sequence alignment