Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   MHH56_RS24710 Genome accession   NZ_CP150265
Coordinates   5609770..5611506 (-) Length   578 a.a.
NCBI ID   WP_339209723.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL K6-3182     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 5604770..5616506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH56_RS24705 (MHH56_24705) - 5605735..5609460 (-) 3726 WP_339204312.1 S-layer homology domain-containing protein -
  MHH56_RS24710 (MHH56_24710) rcrQ 5609770..5611506 (-) 1737 WP_339209723.1 ABC transporter ATP-binding protein Regulator
  MHH56_RS24715 (MHH56_24715) rcrP 5611550..5613313 (-) 1764 WP_339204313.1 ABC transporter ATP-binding protein Regulator
  MHH56_RS24720 (MHH56_24720) - 5613408..5613842 (-) 435 WP_339204315.1 MarR family transcriptional regulator -
  MHH56_RS24725 (MHH56_24725) - 5614016..5615092 (-) 1077 WP_339204316.1 hypothetical protein -

Sequence


Protein


Download         Length: 578 a.a.        Molecular weight: 63651.91 Da        Isoelectric Point: 6.3219

>NTDB_id=968688 MHH56_RS24710 WP_339209723.1 5609770..5611506(-) (rcrQ) [Paenibacillus sp. FSL K6-3182]
MGKLVAYCKPHIPLIVVALLLSVVGTIFTIVGPSKLKDMTDHITKGLMGEIDMDAVSSIGILLAVLYGLSVIFSFFQGYI
MATVTQKVSKSLRTRISQKINKLPLKYFDSTSNGDVLSRVTNDIDTIGQTMNQSVGMLVTSVTMLVGSLVMMFYTNVWMT
LTAIISTFLGFAFMTVMIKKSQTHFVHQQANLGAMNGHVEEIYSGYDVVKVYNGERKAKETFNQINDKLYESSWKSQFLS
GLTMPLMMFVGNFGYVSVCIVGGALAMNGHISFGVIVAFMLYVRLFTQPLGQIAQAATSLQSTAAAAARVFEFLEEKELE
EENHKSKVLKDVKGQVEFRNVSFGYDPDKLIIHDFSARALPGQKIAIVGPTGAGKTTIVNLLMRFYELNGGEIAIDGVPI
HELPRENVHEQFCMVLQDTWLFEGTIKENIVFNKQGVTDADVKAVCKAVGIDHFIRTLTNGYDTVLNEQVNLSAGQKQLI
TIARALIANAPLLILDEATSSVDTRTELLIQEAMDRLMAGRTSFVIAHRLSTIKNADIILVMKDGDIIESGNHYELLAAN
GFYAELYNSQFETAEAAL

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=968688 MHH56_RS24710 WP_339209723.1 5609770..5611506(-) (rcrQ) [Paenibacillus sp. FSL K6-3182]
ATGGGCAAGCTCGTCGCCTATTGCAAGCCGCACATTCCTCTTATTGTCGTGGCTCTGCTGCTGTCCGTGGTGGGCACGAT
ATTTACGATTGTCGGGCCAAGCAAGCTGAAGGATATGACGGATCATATTACCAAAGGGTTAATGGGCGAAATTGATATGG
ACGCAGTTAGCAGCATTGGTATATTGCTTGCTGTTCTATATGGATTAAGCGTCATCTTCTCGTTCTTCCAAGGCTATATT
ATGGCTACGGTAACCCAGAAGGTATCGAAAAGCTTGCGTACGCGCATTTCCCAGAAGATCAATAAGCTTCCGCTCAAATA
TTTTGATTCCACGAGCAATGGAGACGTGCTGAGCCGCGTCACGAACGACATCGACACGATCGGGCAAACGATGAATCAAA
GCGTCGGGATGCTGGTTACTTCCGTTACGATGCTGGTCGGCTCCTTGGTCATGATGTTCTATACAAACGTATGGATGACG
TTGACGGCGATCATTTCGACGTTTCTAGGATTTGCCTTTATGACCGTGATGATCAAAAAATCACAAACGCATTTCGTTCA
CCAGCAGGCGAATCTTGGTGCGATGAATGGCCATGTCGAAGAAATATACTCAGGCTACGATGTGGTTAAGGTCTATAATG
GAGAGCGGAAGGCGAAGGAAACTTTTAATCAGATAAACGATAAATTATATGAAAGTTCATGGAAGTCGCAGTTTCTATCC
GGCTTGACGATGCCGCTCATGATGTTTGTCGGAAACTTCGGTTATGTGTCGGTCTGTATTGTCGGCGGAGCATTAGCGAT
GAATGGTCATATTTCGTTTGGTGTCATCGTCGCTTTCATGCTTTATGTTCGATTGTTCACGCAGCCCTTGGGGCAAATTG
CACAAGCCGCGACTAGTCTGCAATCAACTGCAGCTGCAGCCGCGCGCGTTTTTGAATTTTTAGAAGAGAAAGAGCTTGAG
GAAGAGAACCATAAATCGAAGGTGCTTAAGGATGTTAAGGGGCAGGTCGAATTCCGGAACGTTTCCTTCGGATATGATCC
GGATAAGCTCATCATTCACGATTTCTCAGCCCGTGCTTTGCCTGGTCAGAAGATCGCCATCGTCGGGCCGACGGGTGCAG
GGAAGACGACGATCGTCAATTTGTTGATGCGATTTTATGAGCTGAATGGCGGGGAAATTGCTATCGATGGCGTTCCGATC
CATGAGCTACCTCGGGAAAATGTTCATGAACAATTTTGTATGGTGCTTCAGGATACATGGCTGTTCGAGGGAACGATCAA
AGAAAATATCGTCTTCAACAAGCAAGGGGTTACTGATGCGGATGTGAAGGCCGTCTGCAAGGCTGTCGGTATTGATCATT
TTATCCGAACCTTAACGAATGGCTACGACACGGTATTGAACGAGCAAGTGAACCTTTCCGCAGGTCAGAAACAGCTCATC
ACGATTGCAAGAGCGCTCATTGCGAACGCCCCGCTGCTCATCCTCGACGAGGCAACAAGTTCAGTCGATACGAGAACGGA
GCTTCTCATTCAGGAAGCGATGGATCGGTTGATGGCAGGACGAACTTCTTTTGTTATCGCGCACAGGTTGTCTACGATCA
AGAATGCCGATATTATTCTCGTCATGAAGGACGGGGATATTATCGAAAGCGGCAATCATTACGAGCTGCTTGCGGCAAAC
GGCTTCTATGCTGAATTGTACAATAGCCAGTTTGAGACTGCGGAAGCGGCTTTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.965

99.827

0.599


Multiple sequence alignment