Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OO778_RS15105 Genome accession   NZ_AP026765
Coordinates   3187915..3188943 (+) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3182915..3193943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS15085 (VspSTUT16_28210) rplC 3183482..3184111 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  OO778_RS15090 (VspSTUT16_28220) rpsJ 3184126..3184437 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  OO778_RS15095 (VspSTUT16_28230) rpmE 3184893..3185114 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  OO778_RS15100 (VspSTUT16_28240) priA 3185410..3187611 (+) 2202 WP_258615842.1 primosomal protein N' -
  OO778_RS15105 (VspSTUT16_28250) cytR 3187915..3188943 (+) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  OO778_RS15110 (VspSTUT16_28260) ftsN 3189168..3189716 (+) 549 WP_053809480.1 cell division protein FtsN -
  OO778_RS15115 (VspSTUT16_28270) hslV 3189832..3190383 (+) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  OO778_RS15120 (VspSTUT16_28280) hslU 3190407..3191738 (+) 1332 WP_006742475.1 HslU--HslV peptidase ATPase subunit -
  OO778_RS15125 (VspSTUT16_28290) - 3192713..3193630 (+) 918 WP_005397953.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=96865 OO778_RS15105 WP_254901949.1 3187915..3188943(+) (cytR) [Vibrio sp. STUT-A16]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=96865 OO778_RS15105 WP_254901949.1 3187915..3188943(+) (cytR) [Vibrio sp. STUT-A16]
ATAAACGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCATTAATGAACCCAGAGAAGGTCTCTTCTTCAACGAGAAAAAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTCACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGCATTGAAGATGCTGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGTGAAAGTTCTTTCGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGCACAGATCTAC
CGTTCGATGTCAGTAAGCCAGAGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGTTAGAACTT
CCAACAGTACACATTGATAACCTGACCTCAGCATTTGAAGCGGTGAATTACCTAACCCAGCTAGGTCATAAACGCATCGC
GCAAATCTCGGGTCCAGATACGGCAATATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGCCGTGCAGGCA
TCAATAAAGACCCTCAATATAGTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAGCCACCAACGGCTATTTTCTGCCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CTATCTCTCAGCCTCGCTATGAGATTGGTCGACAAGCGATGCTAATGATGCTTGAGATGTTAAAAGGACACGACGTGCAT
TCAGGCTCGCGCCTACTTGAAACTAACCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874

Multiple sequence alignment