Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHH88_RS13425 Genome accession   NZ_CP150264
Coordinates   2772106..2773797 (-) Length   563 a.a.
NCBI ID   WP_069513092.1    Uniprot ID   -
Organism   Lysinibacillus sp. FSL K6-3209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2767106..2778797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH88_RS13395 (MHH88_13395) - 2767309..2767509 (-) 201 WP_339258673.1 hypothetical protein -
  MHH88_RS13400 (MHH88_13400) - 2767593..2767970 (-) 378 WP_069513094.1 PH domain-containing protein -
  MHH88_RS13405 (MHH88_13405) - 2768119..2768757 (-) 639 WP_069513093.1 NAD(P)H-binding protein -
  MHH88_RS13410 (MHH88_13410) - 2768976..2769539 (-) 564 WP_339258676.1 hypothetical protein -
  MHH88_RS13415 (MHH88_13415) spo0A 2769885..2770676 (-) 792 WP_024361169.1 sporulation transcription factor Spo0A -
  MHH88_RS13420 (MHH88_13420) - 2771031..2771978 (-) 948 WP_024361170.1 SpoIVB peptidase S55 domain-containing protein -
  MHH88_RS13425 (MHH88_13425) recN 2772106..2773797 (-) 1692 WP_069513092.1 DNA repair protein RecN Machinery gene
  MHH88_RS13430 (MHH88_13430) argR 2773910..2774359 (-) 450 WP_024361172.1 transcriptional regulator ArgR -
  MHH88_RS13435 (MHH88_13435) - 2774461..2775279 (-) 819 WP_339258679.1 TlyA family RNA methyltransferase -
  MHH88_RS13440 (MHH88_13440) dxs 2775279..2777180 (-) 1902 WP_024361174.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHH88_RS13445 (MHH88_13445) - 2777345..2778226 (-) 882 WP_069513090.1 polyprenyl synthetase family protein -
  MHH88_RS13450 (MHH88_13450) xseB 2778232..2778465 (-) 234 WP_024361176.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63278.07 Da        Isoelectric Point: 4.6686

>NTDB_id=968648 MHH88_RS13425 WP_069513092.1 2772106..2773797(-) (recN) [Lysinibacillus sp. FSL K6-3209]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSTAHPVYKK
LEEAGIEIEEDSIILRRDLNDSGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIHLLDQFAEEQLSPIL
EQYSIQYSEYRALKKELASISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALDDAAVIDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEEMLAYYEKIKTELSELLNRDEILQLKERKVLEMEVVLSELAEKLSHVRKAAANDLSEAIMAELRELHMEKAKFIVNFD
ALPYFDVNGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTDARIEEVSRMMSGAEITDLTLQHATELLKMANERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=968648 MHH88_RS13425 WP_069513092.1 2772106..2773797(-) (recN) [Lysinibacillus sp. FSL K6-3209]
GTGTTAAGAGAGCTTAGTATTCGAAATTTTGCCATCATTGAGGATTTAACGGTTAGTTTTTCGGATGGTTTAACTGTACT
AACAGGAGAAACTGGGGCTGGGAAATCCATTATTATTGATGCGGTACATTTACTTGCTGGTGGTAGAGGCAATTCAGAAT
TTATTCGTCATGGTGCTAAAAAAGCAGAGTTAGGCGGGTTGTTTCAAATTTCAAGCACTGCACATCCTGTATATAAGAAA
TTGGAGGAAGCAGGCATTGAAATAGAAGAAGATTCTATTATTTTACGCCGCGATTTAAATGACTCTGGCAAAAGTGTTTG
TCGGGTAAATGGCAAATTGGTACCTTTATCGGTTTTACGAGATATTGGTGCAAGTCTAATTGATATACATGGTCAGCATG
AAAATCAAGAACTAATGGATGAAAAACAACATATTCATTTATTGGATCAATTTGCAGAAGAGCAACTATCACCGATTCTT
GAACAATACAGTATTCAATATAGCGAATATCGGGCATTAAAAAAAGAATTAGCCTCCATTTCTATTGATGAGCAGTTAAT
GGCGCAACGCATTGATTTGTACCAATTCCAAATGAAAGAATTGGAAGATGCAAATTTAAAGCTTGGTGAAGAAGATGAGC
TGTTAGATGAACGTCGTCGTCTAATGAATTTTAATAAAATTTTCGAACGCTCGAGTGCTGCCTATGAAGCAATTCAGGGA
GAGACAAAAGGGCTTGACTGGATCGGAACAGCGATGGGCGCATTAGATGATGCTGCGGTCATCGATGAACAGTTTAAAGA
GGCATCTGAGTCGGTAACAACTGCTTTTTACGCTTTACAGGATGCCGCCTATCAGGTGAAAAATGTATTAGATGAGTTAG
AATTCGATCCCGCGCGATTAAATGAAGTGGAGCAACGCTTGGCACTTTTCCAAAACTTAAAGCGCAAATATGGCTCCACT
GTTGAAGAAATGCTCGCCTATTATGAAAAGATTAAAACAGAGCTTAGTGAGCTTTTGAATCGTGATGAAATATTGCAATT
AAAAGAACGAAAAGTACTTGAAATGGAAGTAGTATTAAGTGAACTTGCTGAAAAACTTTCGCATGTTCGAAAAGCAGCAG
CCAATGATTTAAGCGAGGCTATCATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTAAATTTTGAT
GCTTTACCTTACTTTGATGTCAATGGTAAAGACCAAGTGATCTTTTATATTTCAACGAATGTCGGGGAACCACCAAAATC
TTTACCGAAAATTGCTTCAGGTGGGGAATTGTCGCGTATGATGTTAGCGTTAAAAACAATTTTTTCTTCTTCCAATGGTG
TTACATCCATTATTTTTGACGAAGTGGATACTGGCGTAAGTGGTCGTGTAGCGCAAGCAATCGCTGAAAAAATTGCAGCC
ATTTCTGTTAATTCTCAAGTTTTGTGTATTTCGCATTTACCTCAAGTGGCGGCGATGGCTGACCATCATTACTTCATTAA
AAAAGAGGTGGAACATGATCGGACATTTACTTCTTTAGCAGAAATCGATACAGATGCTCGTATTGAAGAAGTGAGCCGAA
TGATGTCGGGTGCAGAAATTACCGATTTAACTTTACAGCATGCGACAGAATTGTTAAAGATGGCAAACGAACGAAAAAAA
CAAATGCGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.778

100

0.54

Multiple sequence alignment