Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OO778_RS10070 Genome accession   NZ_AP026765
Coordinates   2091044..2092465 (+) Length   473 a.a.
NCBI ID   WP_264909553.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2086044..2097465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS10050 (VspSTUT16_18450) - 2086527..2087333 (-) 807 WP_046874846.1 adenosylcobinamide-GDP ribazoletransferase -
  OO778_RS10055 (VspSTUT16_18460) cobT 2087333..2088376 (-) 1044 WP_264909551.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  OO778_RS10060 (VspSTUT16_18470) - 2088624..2089313 (+) 690 WP_005397784.1 NAD(P)H-binding protein -
  OO778_RS10065 (VspSTUT16_18480) - 2089514..2090887 (+) 1374 WP_054867346.1 L-cystine transporter -
  OO778_RS10070 (VspSTUT16_18490) sbcB 2091044..2092465 (+) 1422 WP_264909553.1 exodeoxyribonuclease I Machinery gene
  OO778_RS10075 (VspSTUT16_18500) - 2092521..2092895 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  OO778_RS10080 (VspSTUT16_18510) - 2092897..2093574 (+) 678 WP_005377888.1 LrgB family protein -
  OO778_RS10085 (VspSTUT16_18520) cdd 2094018..2094905 (+) 888 WP_005397788.1 cytidine deaminase -
  OO778_RS10090 (VspSTUT16_18530) purT 2095051..2096226 (+) 1176 WP_258586754.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OO778_RS10095 (VspSTUT16_18540) - 2096299..2096949 (-) 651 WP_046874957.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54418.56 Da        Isoelectric Point: 4.8138

>NTDB_id=96855 OO778_RS10070 WP_264909553.1 2091044..2092465(+) (sbcB) [Vibrio sp. STUT-A16]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLSLLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKQIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=96855 OO778_RS10070 WP_264909553.1 2091044..2092465(+) (sbcB) [Vibrio sp. STUT-A16]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTCGCTGGTGTTCGTACAGATGAAAACTTCAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCT
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGCTGGG
ATTTACTCGATGTATTACGCGCATGCCACGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTTACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAACAACGCTGTTATCACTATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGACTTGCTACCAG
TACCAGTTAAGTTGGTTCATTTAAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCTCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGTTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACGCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGCAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment