Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OO778_RS08470 Genome accession   NZ_AP026765
Coordinates   1734681..1736204 (-) Length   507 a.a.
NCBI ID   WP_074191439.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1729681..1741204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS08450 (VspSTUT16_15260) - 1729689..1731119 (-) 1431 WP_264911321.1 lipopolysaccharide biosynthesis protein -
  OO778_RS08455 (VspSTUT16_15270) - 1731112..1732284 (-) 1173 WP_074191436.1 glycosyltransferase family 4 protein -
  OO778_RS08460 (VspSTUT16_15280) - 1732296..1733480 (-) 1185 WP_264911324.1 glycosyltransferase -
  OO778_RS08465 (VspSTUT16_15290) - 1733636..1734706 (-) 1071 WP_074191438.1 glycosyltransferase family 4 protein -
  OO778_RS08470 (VspSTUT16_15300) luxO 1734681..1736204 (-) 1524 WP_074191439.1 sigma-54 dependent transcriptional regulator Regulator
  OO778_RS08475 (VspSTUT16_15310) - 1736481..1736861 (-) 381 WP_046875251.1 Hpt domain-containing protein -
  OO778_RS08480 (VspSTUT16_15320) - 1736873..1737559 (-) 687 WP_074191440.1 AAA family ATPase -
  OO778_RS08485 (VspSTUT16_15330) - 1737559..1739661 (-) 2103 WP_074191441.1 SLBB domain-containing protein -
  OO778_RS08490 (VspSTUT16_15340) - 1739658..1740524 (-) 867 WP_074191442.1 OmpA family protein -
  OO778_RS08495 (VspSTUT16_15350) - 1740551..1740871 (-) 321 WP_005394270.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56851.72 Da        Isoelectric Point: 6.0406

>NTDB_id=96854 OO778_RS08470 WP_074191439.1 1734681..1736204(-) (luxO) [Vibrio sp. STUT-A16]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTLNHLPAQLTRKSKTARTSTPA
HVTQEPANPTTITSQPVYVEEQLAPAREPSIPTPEPNIQSSAAASPYFNSDGTIRPMWQVEREAIQNAIAYCDGNVLNAA
VMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=96854 OO778_RS08470 WP_074191439.1 1734681..1736204(-) (luxO) [Vibrio sp. STUT-A16]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTCAAAGACGAACCTTA
TGACATTTTTCATGTCGAAACAGGTCGCGAAGCAATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGATATGTCTGGTGAAGACGTATTGGATTGGATCAACCAGAATGACATTCCTACCTCCGTTATTATTGCT
ACAGCGCACGGCAGCGTAGACTTAGCCGTTAACCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAACCTATTAACGC
CGATCGCCTAAAAACTTCTGTTGCATTACACCTCAAACGCGCCAAATTGGAAGATTTAGTAGAAAACATTCAGTCCAAGT
TTGATCGCCATAACTATCACGGATTTATCGGTTCAAGTCTCCCAATGCAGGCGGTATATAAAACTATTGATGCCGTTGCT
CCAACATCTGCCAGTGTCTTTATTGTGGGTGAAAGCGGCACAGGTAAAGAAGTCTGTGCTGAAGCCGTGCACCGTCAGAG
CGACCGTAGAGACAAGCCTTTTATTGCTATTAACTGCGGGGCCATCCCCCGAGATTTAATGGAAAGTGAGATTTTTGGCC
ACGTTAAAGGCGCATTTACCGGGGCCACAACAGACCGAAAAGGTGCTGCGACGCTGGCTCACGGTGGAACGCTTTTTCTC
GATGAACTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTTCAAACAGGAACCTACACACCGCTTGG
TGGCACTCGAGAGATGAAGGTGGATGTTCGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTGGAAGAAGGTC
GTTTTCGTGAAGATTTGTATTACCGCGTACACGTAATACCTATCGATATGCCCCCCCTACGTGAGCGAGGAAGTGACATC
GTCACGTTGGCCAAGCACTTTTTGACCACTTATGCTAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCACTACGAATGGCCGGGTAATGTAAGGCAATTGCAAAACATCATACGTAACATTGTGGTGCTTAATA
ATGACGAAAAAGTCACGCTGAATCACCTACCCGCTCAACTGACTAGAAAGTCTAAAACAGCGAGAACATCCACTCCCGCA
CATGTAACTCAAGAGCCAGCAAACCCTACAACAATAACATCCCAACCTGTGTATGTTGAGGAACAGTTGGCCCCCGCTAG
AGAACCGTCAATACCGACACCGGAACCTAACATACAATCCTCAGCGGCTGCCTCTCCGTACTTTAACTCTGATGGAACCA
TTCGCCCTATGTGGCAAGTGGAACGCGAGGCGATTCAAAACGCAATCGCATACTGTGATGGCAACGTTCTCAATGCCGCC
GTAATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACAATC
TTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(457-493)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.239

0.485

Multiple sequence alignment