Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OO778_RS05445 Genome accession   NZ_AP026765
Coordinates   1136116..1137522 (+) Length   468 a.a.
NCBI ID   WP_005396653.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131116..1142522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS05425 (VspSTUT16_09880) rsxB 1131648..1132244 (-) 597 WP_005396655.1 electron transport complex subunit RsxB -
  OO778_RS05430 (VspSTUT16_09890) rsxA 1132248..1132826 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  OO778_RS05440 (VspSTUT16_09910) uvrB 1133790..1135820 (+) 2031 WP_047010067.1 excinuclease ABC subunit UvrB -
  OO778_RS05445 (VspSTUT16_09920) luxO 1136116..1137522 (+) 1407 WP_005396653.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OO778_RS05450 (VspSTUT16_09930) luxU 1137519..1137863 (+) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  OO778_RS05455 (VspSTUT16_09940) - 1137974..1138870 (-) 897 WP_074191595.1 YvcK family protein -
  OO778_RS05460 (VspSTUT16_09950) moaA 1139169..1140158 (+) 990 WP_005396649.1 GTP 3',8-cyclase MoaA -
  OO778_RS05465 (VspSTUT16_09960) moaB 1140264..1140776 (+) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  OO778_RS05470 (VspSTUT16_09970) moaC 1140803..1141282 (+) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  OO778_RS05475 (VspSTUT16_09980) moaD 1141279..1141536 (+) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  OO778_RS05480 (VspSTUT16_09990) moaE 1141538..1141993 (+) 456 WP_048625774.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52118.68 Da        Isoelectric Point: 6.2543

>NTDB_id=96852 OO778_RS05445 WP_005396653.1 1136116..1137522(+) (luxO) [Vibrio sp. STUT-A16]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=96852 OO778_RS05445 WP_005396653.1 1136116..1137522(+) (luxO) [Vibrio sp. STUT-A16]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTCTGCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGTTAAAAA
ACGAGGCTGATAACCCGGGAAATCAAAGTTATCAAGGCTTTATTGGCAGTAGTCAAACAATGCAACAGGTTTACCGCACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGTATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCCGAGGC
AATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACCGGTGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAATTGTGTGAGATGGATTTAGATTTGCAAACCAAATTGCTACGATTTATTCAAACCGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCGCCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATACTCACTGTTAGGCTATATGTCGCACGAGGAAGGAAAAAGCTTCGTGCGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCAGGCAACGTTCGTCAGTTACAAAACGTGCTGCGCAATA
TCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTTATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.082

95.94

0.835

Multiple sequence alignment