Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MKX80_RS18710 Genome accession   NZ_CP150260
Coordinates   3658452..3658736 (-) Length   94 a.a.
NCBI ID   WP_154996226.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3653452..3663736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS18690 (MKX80_18690) smpB 3654258..3654731 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  MKX80_RS18695 (MKX80_18695) rnr 3654847..3657150 (-) 2304 WP_339227369.1 ribonuclease R -
  MKX80_RS18700 (MKX80_18700) - 3657164..3657910 (-) 747 WP_154996230.1 carboxylesterase -
  MKX80_RS18705 (MKX80_18705) secG 3658051..3658281 (-) 231 WP_154996228.1 preprotein translocase subunit SecG -
  MKX80_RS18710 (MKX80_18710) abrB 3658452..3658736 (-) 285 WP_154996226.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MKX80_RS18715 (MKX80_18715) - 3658765..3658998 (-) 234 WP_085959538.1 helix-turn-helix transcriptional regulator -
  MKX80_RS18720 (MKX80_18720) - 3659151..3659552 (+) 402 WP_154996224.1 transcriptional regulator -
  MKX80_RS18725 (MKX80_18725) - 3659718..3660116 (+) 399 WP_176277045.1 helix-turn-helix transcriptional regulator -
  MKX80_RS18730 (MKX80_18730) - 3660165..3660842 (-) 678 WP_154996220.1 ABC transporter permease -
  MKX80_RS18735 (MKX80_18735) - 3660858..3661775 (-) 918 WP_154996218.1 osmoprotectant ABC transporter substrate-binding protein -
  MKX80_RS18740 (MKX80_18740) - 3661789..3662442 (-) 654 WP_154996216.1 ABC transporter permease -
  MKX80_RS18745 (MKX80_18745) - 3662464..3663603 (-) 1140 WP_154996213.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10502.36 Da        Isoelectric Point: 7.9620

>NTDB_id=968481 MKX80_RS18710 WP_154996226.1 3658452..3658736(-) (abrB) [Bacillus sp. FSL K6-0972]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIVLTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMTALSEKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=968481 MKX80_RS18710 WP_154996226.1 3658452..3658736(-) (abrB) [Bacillus sp. FSL K6-0972]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCCGGGTTGTTCTCCCGGTCGAAATGCGCAGAGTGCTGAA
TATCAATGAAAAGGATCCACTCGAAATATACACCGACGGAGAAAACATCGTTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACGAAAAATAAAACGTATGCAGGCGGCAAAATCGTACTCAGCCCGCGGGGAGCGGAA
ATGCTCCTGGAAGATATGATGACAGCCTTGTCAGAAAAGAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-84)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

96.809

0.532

Multiple sequence alignment