Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MKX80_RS14845 Genome accession   NZ_CP150260
Coordinates   2928064..2930460 (-) Length   798 a.a.
NCBI ID   WP_268343302.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2923064..2935460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS14825 (MKX80_14825) - 2926010..2927068 (-) 1059 WP_154995770.1 AI-2E family transporter -
  MKX80_RS14830 (MKX80_14830) - 2927157..2927288 (-) 132 WP_003183926.1 YrzQ family protein -
  MKX80_RS14835 (MKX80_14835) - 2927304..2927495 (-) 192 WP_003183928.1 hypothetical protein -
  MKX80_RS14840 (MKX80_14840) - 2927511..2927975 (-) 465 WP_154995772.1 PRC-barrel domain-containing protein -
  MKX80_RS14845 (MKX80_14845) recD2 2928064..2930460 (-) 2397 WP_268343302.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MKX80_RS14850 (MKX80_14850) - 2930511..2931161 (-) 651 WP_154995774.1 tetratricopeptide repeat protein -
  MKX80_RS14855 (MKX80_14855) mnmA 2931257..2932375 (-) 1119 WP_154995776.1 tRNA 2-thiouridine(34) synthase MnmA -
  MKX80_RS14860 (MKX80_14860) - 2932481..2933620 (-) 1140 WP_182070294.1 cysteine desulfurase family protein -
  MKX80_RS14865 (MKX80_14865) cymR 2933641..2934057 (-) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89779.44 Da        Isoelectric Point: 4.9464

>NTDB_id=968469 MKX80_RS14845 WP_268343302.1 2928064..2930460(-) (recD2) [Bacillus sp. FSL K6-0972]
MQRHNPDQIEMEEASFVKGTVTAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIETRQLIIETLKLLNQSSGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIASVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQVLAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPIVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLLQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=968469 MKX80_RS14845 WP_268343302.1 2928064..2930460(-) (recD2) [Bacillus sp. FSL K6-0972]
ATGCAGCGCCATAACCCGGACCAAATCGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTAACGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTACTGAAAGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAGGACAAAACCGTTTCTG
TCACTGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACTTTTTACGGAAAGACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAGGAAGTGCCGACAACGAAAGAAGGCGTGATCCAATATTTGGCCAGCGATTT
ATTTGAAGGAATCGGTAAGAAAACGGCCGAGGAAATTGTCAATAAGCTTGGGGAAGGTGCAATCAACAAAATTTTAAGCG
ACGGCGCCGTCTTGTATGATGTCCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTTCAGCAGCATCAG
GGACTTGAGCAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTATCCATGAAGATTTATCAGGCGTACGA
AGCGGAAACGCTCGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAAGATGTCGAAGGAATCGGCTTTATCAAGGCGG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAAGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGAAACGAGACAGCTCATCATCGAGACGCTAAAACTGTTAAACCAGTCTTC
AGGTGATGAAAAAGTAACCGAGATGGATGTGGCCGACGCGATCATTTCCTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCTTCCCTTTACTACGCTGAACAAAGCTTTGCGAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGCCAAAAAGAAGCCATTCAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACAGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTGAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTACTGGCAGCGCCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGACTGCCGGCCGT
TACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGGCGGCTGC
TCATTATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGGATACAGGTC
ATCATGGTCGGAGACGAAGACCAGCTTCCGTCTGTCGGTCCCGGACAGGTGCTGAGGGATCTTTTGGCATCGAATGTGAT
TGCTTCTGTCAGACTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCGGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTCATTCGCTGCCGCCAGCAGCAGATTAAAGAAGTC
GTCGAAAAAGTCGTTAAAAACGCGCTGCAAAAAGGATATTCGGCCAGAGATATTCAGGTTTTGGCTCCGATGTATAGAGG
AGCGGCAGGCATCAATGAGTTAAACGCGCTTTTGCAGGGCATCCTGAATCCGCCAAAGCCGAAAGGCAGGGAAATGAAGT
ACGGCGATGTCGTGTACCGTACCGGAGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCACAACGTGTTTAACGGTGAT
ATGGGTGAAATCGTTTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGACATGGCCGTCGTCTCTTTCGACGGGAA
TGAAATCACGTTTACAAAAAAAGATTTCAACCAATTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAAGGCAGCG
AATTTCCGATCGTCATCCTTCCGATCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAAAAATTCCTGATTCTGTGCGGTGAAGAAGAAGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCAGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCTGCAGGCGGCACATGAAGAGGATGAAGAGCTCATGGCGCTTCAAAAAGAGCTGC
CTTTCAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.477

100

0.816

Multiple sequence alignment