Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MKX80_RS13995 Genome accession   NZ_CP150260
Coordinates   2770912..2771682 (-) Length   256 a.a.
NCBI ID   WP_339227006.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2765912..2776682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS13975 (MKX80_13975) - 2765987..2766799 (-) 813 WP_154997315.1 pyruvate, water dikinase regulatory protein -
  MKX80_RS13980 (MKX80_13980) - 2766825..2767463 (-) 639 WP_094777426.1 helix-turn-helix transcriptional regulator -
  MKX80_RS13985 (MKX80_13985) glyS 2767661..2769700 (-) 2040 WP_182070356.1 glycine--tRNA ligase subunit beta -
  MKX80_RS13990 (MKX80_13990) glyQ 2769693..2770580 (-) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  MKX80_RS13995 (MKX80_13995) recO 2770912..2771682 (-) 771 WP_339227006.1 DNA repair protein RecO Machinery gene
  MKX80_RS14000 (MKX80_14000) - 2771720..2771863 (-) 144 WP_003183626.1 YqzL family protein -
  MKX80_RS14005 (MKX80_14005) era 2772026..2772931 (-) 906 WP_023855242.1 GTPase Era -
  MKX80_RS14010 (MKX80_14010) - 2772912..2773322 (-) 411 WP_043928563.1 cytidine deaminase -
  MKX80_RS14015 (MKX80_14015) - 2773455..2773835 (-) 381 WP_154994354.1 diacylglycerol kinase family protein -
  MKX80_RS14020 (MKX80_14020) ybeY 2773813..2774289 (-) 477 WP_182070354.1 rRNA maturation RNase YbeY -
  MKX80_RS14025 (MKX80_14025) - 2774286..2776340 (-) 2055 WP_234113243.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29514.17 Da        Isoelectric Point: 8.5644

>NTDB_id=968466 MKX80_RS13995 WP_339227006.1 2770912..2771682(-) (recO) [Bacillus sp. FSL K6-0972]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLNVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYEEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=968466 MKX80_RS13995 WP_339227006.1 2770912..2771682(-) (recO) [Bacillus sp. FSL K6-0972]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAAATCATTACGCTGTTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCTAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGTAAATCATCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCATACGCGGCCTACATCGCTGAATTAATTGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAACGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCTGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CAAAGGATGAGCTGAAAAGAGTCATTCAGACGTACTATGAAGAGTATTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGTGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

78.516

100

0.785

Multiple sequence alignment