Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OO778_RS02920 Genome accession   NZ_AP026765
Coordinates   602741..603259 (+) Length   172 a.a.
NCBI ID   WP_005396698.1    Uniprot ID   A0AAE4S8W0
Organism   Vibrio sp. STUT-A16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 597741..608259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS02910 (VspSTUT16_04910) gshA 600458..602026 (+) 1569 WP_253651603.1 glutamate--cysteine ligase -
  OO778_RS02915 (VspSTUT16_04920) - 602090..602656 (+) 567 WP_012841415.1 hypothetical protein -
  OO778_RS02920 (VspSTUT16_04930) luxS 602741..603259 (+) 519 WP_005396698.1 S-ribosylhomocysteine lyase Regulator
  OO778_RS02925 (VspSTUT16_04940) - 603364..604632 (-) 1269 WP_005396696.1 CNNM domain-containing protein -
  OO778_RS02930 (VspSTUT16_04950) - 604757..605551 (-) 795 WP_047008980.1 inner membrane protein YpjD -
  OO778_RS02935 (VspSTUT16_04960) ffh 605776..607158 (+) 1383 WP_258614052.1 signal recognition particle protein -
  OO778_RS02940 (VspSTUT16_04970) rpsP 607368..607616 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  OO778_RS02945 (VspSTUT16_04980) rimM 607646..608194 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19078.77 Da        Isoelectric Point: 4.6153

>NTDB_id=96846 OO778_RS02920 WP_005396698.1 602741..603259(+) (luxS) [Vibrio sp. STUT-A16]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=96846 OO778_RS02920 WP_005396698.1 602741..603259(+) (luxS) [Vibrio sp. STUT-A16]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCGGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATTC
ATACACTAGAGCACCTTTATGCAGGCTTTATGCGCAATCATCTAAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACGGGCTTTTACATGAGCCTGATTGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
CATGGAAGACGTACTAAAGGTAGAAAGCCAGAACAAGATCCCTGAACTCAACGAATACCAATGTGGCACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAGATCGCAAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment