Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   MKX80_RS06125 Genome accession   NZ_CP150260
Coordinates   1215152..1218652 (+) Length   1166 a.a.
NCBI ID   WP_268323927.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1210152..1223652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS06100 (MKX80_06100) - 1210813..1212180 (-) 1368 WP_154994069.1 HAMP domain-containing sensor histidine kinase -
  MKX80_RS06105 (MKX80_06105) - 1212177..1212851 (-) 675 WP_268317747.1 response regulator transcription factor -
  MKX80_RS06110 (MKX80_06110) - 1212942..1213382 (-) 441 WP_216929240.1 ferritin-like domain-containing protein -
  MKX80_RS06115 (MKX80_06115) modA 1213623..1214378 (+) 756 WP_234113169.1 molybdate ABC transporter substrate-binding protein -
  MKX80_RS06120 (MKX80_06120) modB 1214387..1215043 (+) 657 WP_154994075.1 molybdate ABC transporter permease subunit -
  MKX80_RS06125 (MKX80_06125) addB 1215152..1218652 (+) 3501 WP_268323927.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  MKX80_RS06130 (MKX80_06130) addA 1218639..1222331 (+) 3693 WP_268323926.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  MKX80_RS06135 (MKX80_06135) sbcD 1222397..1223578 (+) 1182 WP_154994080.1 exonuclease subunit SbcD -

Sequence

Protein


Download         Length: 1166 a.a.        Molecular weight: 134400.49 Da        Isoelectric Point: 5.6801

>NTDB_id=968436 MKX80_RS06125 WP_268323927.1 1215152..1218652(+) (addB) [Bacillus sp. FSL K6-0972]
MGAVFLSGRSGSGKTTFILNEIREKLRNEPLGKPIIFLVPDQMTFLMEYELSKTPDLGGTIRAQVYSFSRLAWRVLQHTG
GMNRPFLTGTGIQMLLRRLIEEHKGEFKVYQNASDKSGFTEQVERMLTEFKRHCLQPESIRDMMEGTGKSEYEDERILSD
KLHDLYILYSKLEENLENQYVQSEDYLTLLAEQIPYADEIRNAAVYVDGFHQFTPQEMSVLEQLMVHAEEITFSLTADKP
FTANSPNDLHLFRMTGKAYYDLYQKAKELGLDPSEVRLEETKRHQHHPELQHLERYFDERPAKPYPGRTESLRIMQASNR
RTEIEGIAREIHSLIRQGRFRLRDIAVIARNVEDYKDTIKEVFKDCELPFFIDGKESMQNHPLIELIRSTLDIIKGNWRY
EAVFRCVKTELLFPEGQPKERLREQIDQLENYCIAYGIKGDRWTSKDPFVYRRYASLDEDFAKTDKEIETENMLNELKGW
IVPPIHRLQKRLKKAETVREMAEAVYLYLEEADVPMKLEQERRLAEESGRIAESRQHEQVWDAVIQLLDEFVEMMGTERI
SFALFKQMIETGLESLKFALIPPALDQVFIGNMDLSRMYGTKCTFLIGVNDGILPARPADDGVLSDDDREWLKRNGAQLA
ATGREQLLDENFLIYMTLSSPSEKLYVSYPIADSEGKTLLPSTVVKRLNELFPDGEEKMLIHEPEQLDDDAQLEFLVNKG
AALSHLAGQLGIWTRQYAISDVWWSTYNFLMNEPDRIFSQNILSSLFFRNKVENLNRHVSRDLYGEHIQGSVSRMETFKA
CPFSHFASHGLKLKERQFFKLEAPDIGQLFHSALKLISDRLHELKMDWRDLTKAQCETLSSDAVERLAPKLQKEILLSSN
RHHYVKQKLQKIIARVSGILSEHAKASGFAPVGIELGFGGKGPLPPMRFTLKNGCTMELVGRIDRVDKAESSKGLLLRIV
DYKSSDKGLDLAEVYYGLALQMLTYLDLSITHSTDWLGMKASPAGVLYFHVHDPMIQASVPLGLDEIEKEIFKKFKMKGL
LLGDQEAVKLMDTTLEQGRSNIISAGLKKDGSLRSDSDVVAEEDFHVLRRHIRRTFQKAGEEITDGKVSIEPYKLKDRTP
CTYCSYRSFCQFDESLEENEYRILKPEKDNVILERLKKEDEADGDF

Nucleotide


Download         Length: 3501 bp        

>NTDB_id=968436 MKX80_RS06125 WP_268323927.1 1215152..1218652(+) (addB) [Bacillus sp. FSL K6-0972]
GTGGGAGCAGTATTTTTATCAGGCAGATCCGGGAGTGGAAAAACGACCTTTATCCTGAATGAAATCAGAGAAAAACTTCG
CAATGAACCGCTTGGAAAACCGATCATTTTTCTAGTCCCGGATCAAATGACGTTTTTAATGGAATACGAGCTTAGCAAAA
CACCCGATTTGGGCGGAACCATCCGCGCCCAGGTGTACAGTTTTTCAAGGCTTGCCTGGCGAGTGCTCCAACATACCGGA
GGCATGAACCGGCCGTTTTTGACGGGGACGGGCATTCAGATGCTGCTGCGGAGACTGATTGAAGAGCATAAGGGCGAGTT
TAAAGTCTATCAAAATGCAAGCGATAAAAGCGGATTTACGGAGCAGGTGGAACGGATGCTGACCGAATTTAAACGGCACT
GTCTGCAACCTGAAAGCATCCGGGACATGATGGAAGGGACGGGCAAGTCGGAATACGAAGATGAACGGATTCTTTCCGAT
AAATTGCACGACTTATATATTTTGTACAGCAAGCTTGAGGAAAATCTGGAGAATCAATATGTTCAATCTGAAGATTATTT
GACGCTTTTGGCCGAGCAGATTCCGTATGCGGATGAGATTAGAAACGCTGCCGTTTATGTGGACGGATTTCATCAATTTA
CGCCTCAGGAGATGAGCGTACTAGAACAGCTGATGGTACATGCGGAAGAGATCACGTTTTCGCTGACGGCTGATAAGCCG
TTTACGGCCAACAGCCCGAATGATCTCCATCTGTTCAGGATGACCGGGAAGGCGTACTATGACCTTTACCAGAAGGCGAA
GGAACTCGGCCTTGATCCGTCTGAAGTGCGGCTGGAAGAGACGAAACGGCACCAACATCATCCGGAGCTTCAGCATCTTG
AACGCTATTTTGACGAAAGGCCTGCAAAACCGTATCCCGGACGGACGGAATCGCTCCGCATCATGCAGGCGTCGAACAGA
AGAACCGAGATTGAAGGAATTGCGCGCGAGATTCATTCTTTAATCCGCCAGGGCCGTTTCCGGCTCAGGGATATCGCCGT
TATCGCCCGCAATGTCGAAGATTATAAAGATACGATAAAAGAAGTTTTTAAAGACTGCGAACTTCCTTTTTTCATAGACG
GCAAGGAATCGATGCAAAATCATCCGCTTATTGAGCTGATCCGTTCGACGCTTGATATCATTAAAGGAAACTGGCGGTAT
GAAGCGGTATTCCGCTGTGTTAAAACGGAACTTTTATTCCCGGAAGGACAACCGAAGGAACGGCTGCGCGAACAGATTGA
CCAGCTTGAAAACTACTGTATTGCGTATGGCATTAAAGGAGACAGATGGACAAGCAAAGATCCGTTTGTTTACAGAAGAT
ACGCTTCACTGGATGAGGATTTTGCCAAGACAGACAAAGAGATTGAAACGGAAAATATGCTCAATGAACTAAAGGGCTGG
ATCGTTCCGCCGATTCACAGGCTGCAGAAGCGCTTGAAAAAAGCTGAAACAGTCAGGGAAATGGCCGAAGCCGTTTACCT
TTATCTTGAAGAAGCCGATGTTCCGATGAAGCTTGAACAGGAAAGGCGGCTAGCCGAAGAAAGCGGAAGGATTGCCGAGT
CGCGCCAGCATGAGCAAGTATGGGATGCCGTTATTCAACTGTTGGACGAGTTTGTTGAAATGATGGGCACAGAGCGGATA
TCGTTTGCTTTATTTAAGCAAATGATCGAAACCGGATTGGAGTCTTTGAAATTCGCGCTGATTCCGCCCGCACTTGATCA
AGTGTTTATCGGCAATATGGACCTTTCAAGAATGTACGGCACGAAATGCACATTTCTCATCGGTGTAAACGACGGCATAC
TTCCGGCGAGGCCTGCGGATGACGGCGTGCTTTCAGACGATGACCGGGAGTGGCTGAAACGAAACGGCGCACAGCTTGCG
GCAACAGGGCGAGAGCAGCTCTTGGACGAGAATTTTCTGATCTATATGACGCTTTCAAGCCCGTCTGAAAAGCTATATGT
CTCCTATCCGATCGCGGATTCGGAAGGGAAGACGCTGCTTCCTTCAACAGTGGTGAAGCGTCTGAATGAACTGTTCCCGG
ATGGCGAAGAAAAGATGCTGATTCATGAACCCGAGCAGCTGGACGATGATGCCCAGCTTGAATTTCTCGTGAATAAAGGC
GCCGCCTTGAGCCATTTGGCAGGGCAGCTCGGGATCTGGACGAGGCAGTATGCGATCAGCGATGTATGGTGGAGTACATA
CAATTTTTTAATGAATGAGCCTGACCGCATCTTTTCTCAAAACATCCTGTCCAGCCTGTTTTTCAGAAACAAGGTTGAAA
ACTTGAACCGGCATGTGAGCCGCGATTTGTACGGGGAGCACATTCAGGGAAGCGTGTCGCGGATGGAGACGTTCAAAGCC
TGTCCGTTTTCTCATTTTGCTTCGCACGGTTTAAAGCTGAAGGAACGCCAATTTTTCAAGCTTGAAGCTCCGGATATCGG
TCAGCTGTTCCACTCGGCGCTGAAGCTGATTTCAGACCGTCTTCACGAGCTTAAAATGGATTGGCGCGACTTAACGAAAG
CCCAATGCGAGACTTTGTCAAGCGATGCGGTCGAACGGCTCGCGCCTAAACTGCAAAAGGAGATTCTGCTCAGCTCGAAC
CGTCATCATTATGTGAAGCAGAAGCTGCAAAAAATCATTGCCAGGGTATCGGGCATTTTAAGTGAGCATGCAAAGGCCAG
CGGATTTGCTCCCGTCGGCATAGAGCTCGGATTCGGGGGGAAAGGTCCGCTTCCTCCAATGCGTTTTACACTGAAGAACG
GCTGCACGATGGAGCTTGTCGGCCGGATCGACAGAGTGGATAAAGCGGAGAGCTCAAAAGGGCTGCTGCTTAGGATTGTC
GACTATAAATCAAGCGATAAAGGCCTCGATTTGGCCGAGGTCTATTACGGCCTCGCCCTGCAAATGCTGACATATCTCGA
TTTGTCGATCACGCATTCAACCGATTGGCTCGGCATGAAAGCATCCCCGGCAGGCGTGCTCTATTTTCATGTGCACGATC
CGATGATCCAGGCTTCGGTGCCGCTCGGCCTTGATGAGATAGAAAAAGAGATTTTCAAAAAGTTCAAGATGAAAGGGCTG
CTCTTGGGAGACCAGGAAGCGGTCAAGCTGATGGACACCACACTGGAACAAGGCAGGTCGAACATCATCAGCGCCGGTTT
GAAAAAAGACGGTTCGCTCCGTTCAGATTCTGACGTTGTTGCAGAAGAGGATTTTCATGTATTGAGGCGTCATATCCGCC
GGACATTTCAGAAGGCCGGCGAGGAGATCACAGACGGCAAAGTGTCGATCGAGCCTTACAAGCTAAAAGACCGGACACCG
TGCACATATTGTTCGTACCGGTCATTCTGCCAGTTTGACGAATCGCTTGAGGAAAATGAATATCGGATATTAAAACCTGA
AAAAGACAACGTGATATTGGAGCGGCTGAAAAAGGAGGATGAGGCAGATGGAGATTTCTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(790-1131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

73.906

99.914

0.738

Multiple sequence alignment