Detailed information NTG0096843

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OO778_RS02760
• Genome accession: NZ_AP026765
• Coordinates: 573585..574571 (+)
• Length: 328 a.a.
• NCBI ID: WP_005393877.1
• Uniprot ID: A0AAE4M7L2
• Organism: Vibrio sp. STUT-A16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 568585..579571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO778_RS02725 (VspSTUT16_04620)	ftsB	568594..568875 (+)	282	WP_005380907.1	cell division protein FtsB	-
OO778_RS02730 (VspSTUT16_04630)	ispD	568877..569581 (+)	705	WP_104974803.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OO778_RS02735 (VspSTUT16_04640)	ispF	569599..570075 (+)	477	WP_005393886.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OO778_RS02740 (VspSTUT16_04650)	truD	570122..571165 (+)	1044	WP_139060522.1	tRNA pseudouridine(13) synthase TruD	-
OO778_RS02745 (VspSTUT16_04660)	surE	571165..571941 (+)	777	WP_005393882.1	5'/3'-nucleotidase SurE	-
OO778_RS02750 (VspSTUT16_04670)	-	571941..572567 (+)	627	WP_046875091.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OO778_RS02755 (VspSTUT16_04680)	-	572581..573504 (+)	924	WP_264910659.1	peptidoglycan DD-metalloendopeptidase family protein	-
OO778_RS02760 (VspSTUT16_04690)	rpoS	573585..574571 (+)	987	WP_005393877.1	RNA polymerase sigma factor RpoS	Regulator
OO778_RS02765 (VspSTUT16_04700)	mutS	574654..577245 (-)	2592	WP_264910660.1	DNA mismatch repair protein MutS	-
OO778_RS02770 (VspSTUT16_04710)	-	577419..578693 (+)	1275	WP_205390999.1	site-specific integrase	-
OO778_RS02775 (VspSTUT16_04720)	-	579041..579388 (-)	348	WP_146074157.1	hypothetical protein	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37384.30 Da
• Isoelectric Point: 4.7299

>NTDB_id=96843 OO778_RS02760 WP_005393877.1 573585..574571(+) (rpoS) [Vibrio sp. STUT-A16]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=96843 OO778_RS02760 WP_005393877.1 573585..574571(+) (rpoS) [Vibrio sp. STUT-A16]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCCCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATATAGTAATCG
CGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAGAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851