Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKX80_RS02130 Genome accession   NZ_CP150260
Coordinates   388290..388736 (-) Length   148 a.a.
NCBI ID   WP_182069366.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 383290..393736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS02105 (MKX80_02105) - 383895..384770 (-) 876 WP_182069369.1 transporter substrate-binding domain-containing protein -
  MKX80_RS02110 (MKX80_02110) - 384954..385505 (+) 552 WP_182069368.1 NAD(P)H-dependent oxidoreductase -
  MKX80_RS02115 (MKX80_02115) - 385602..386327 (+) 726 WP_182069367.1 AAA family ATPase -
  MKX80_RS02120 (MKX80_02120) - 386397..387833 (+) 1437 WP_154995497.1 family 1 glycosylhydrolase -
  MKX80_RS02125 (MKX80_02125) - 387874..388272 (-) 399 WP_154995495.1 competence protein ComJ -
  MKX80_RS02130 (MKX80_02130) nucA/comI 388290..388736 (-) 447 WP_182069366.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MKX80_RS02135 (MKX80_02135) - 389005..389208 (+) 204 WP_128814219.1 hypothetical protein -
  MKX80_RS02140 (MKX80_02140) - 389214..390017 (+) 804 WP_268310378.1 protein kinase -
  MKX80_RS02145 (MKX80_02145) - 390293..391996 (-) 1704 WP_268342622.1 methyl-accepting chemotaxis protein -
  MKX80_RS02150 (MKX80_02150) - 392114..392854 (-) 741 WP_182069361.1 LXG domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16349.38 Da        Isoelectric Point: 5.7093

>NTDB_id=968427 MKX80_RS02130 WP_182069366.1 388290..388736(-) (nucA/comI) [Bacillus sp. FSL K6-0972]
MDKIKSLLITLLAIAVVIIGIISGDFFTSEHQPTGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAD
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYIRPSDNRGAGSWVGNQVSDYPDGTKVLFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=968427 MKX80_RS02130 WP_182069366.1 388290..388736(-) (nucA/comI) [Bacillus sp. FSL K6-0972]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCATCGCCGTCGTGATCATCGGCATTATATCTGGCGACTTTTT
TACTTCAGAACATCAGCCTACTGGCCGGCAAAACGGCTCAAACTATGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAAGCCATCAAAAAAGGGCATTCCGAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCAGAAAGGATTCATTAAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGGCCGTCTGATAACCGCGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGATGGGACGAAGGTACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642

Multiple sequence alignment