Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKX80_RS00600 Genome accession   NZ_CP150260
Coordinates   110318..111697 (+) Length   459 a.a.
NCBI ID   WP_268342871.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105318..116697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS00580 (MKX80_00580) - 105685..106149 (+) 465 WP_003178269.1 CtsR family transcriptional regulator -
  MKX80_RS00585 (MKX80_00585) - 106164..106718 (+) 555 WP_003178271.1 UvrB/UvrC motif-containing protein -
  MKX80_RS00590 (MKX80_00590) - 106718..107809 (+) 1092 WP_003178273.1 protein arginine kinase -
  MKX80_RS00595 (MKX80_00595) clpC 107806..110238 (+) 2433 WP_075752568.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  MKX80_RS00600 (MKX80_00600) radA 110318..111697 (+) 1380 WP_268342871.1 DNA repair protein RadA Machinery gene
  MKX80_RS00605 (MKX80_00605) disA 111701..112777 (+) 1077 WP_182069556.1 DNA integrity scanning diadenylate cyclase DisA -
  MKX80_RS00610 (MKX80_00610) - 112908..113996 (+) 1089 WP_154999859.1 PIN/TRAM domain-containing protein -
  MKX80_RS00615 (MKX80_00615) ispD 114013..114708 (+) 696 WP_182069554.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MKX80_RS00620 (MKX80_00620) ispF 114701..115177 (+) 477 WP_152849939.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49823.21 Da        Isoelectric Point: 7.4261

>NTDB_id=968425 MKX80_RS00600 WP_268342871.1 110318..111697(+) (radA) [Bacillus sp. FSL K6-0972]
MAKTKTKFICHSCGYESAKWMGKCPGCGTWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRESTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPQPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=968425 MKX80_RS00600 WP_268342871.1 110318..111697(+) (radA) [Bacillus sp. FSL K6-0972]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGCTACGAATCTGCCAAGTGGATGGGGAAGTGCCCCGGATG
CGGCACATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACCGTGCAAAAGCCTTCACCTCTCACTTCAATCGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTGGGCGAATTC
AACCGCGTCTTGGGAAACGGTATTGTCAAAGGTTCACTCGTTTTAATCGGAGGCGATCCCGGCATCGGAAAATCAACTTT
GCTGCTTCAAGTATCTGCTCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGTGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGCATCAACAGTCCCACTCTCCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAATCCATCATTCGTGGTGGTTGATTCGATTCAAACTGTTTACCAAAGTGATATCACATCCGC
TCCGGGCAGCGTGTCCCAGGTCAGGGAATCCACCGCTGAGCTGATGAGAATTGCAAAAACGAAAGGGATTCCGATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTTCTTTACTTT
GAAGGTGAGCGCCATCATACATTTCGGATTTTAAGAGCAGTCAAAAACAGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAGGTGTTGAATCCGTCGGAAATCTTTCTCGAAGAGCGCTCGGCGGGAGCAGCCG
GATCGAGTGTCGTGGCCTCAATGGAAGGCACGAGGCCGGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCCACGAGTTTT
GGAAATCCGCGCAGGATGGCAACCGGAATTGACCATAACCGCGTCTCATTGCTGATGGCGGTTTTAGAAAAAAGGGTTGG
GTTGCTCCTGCAAAATCAAGACGCCTATTTGAAAGTCGCCGGCGGCGTCAAGCTGGACGAGCCGGCGATTGATCTCGCCG
TTGCGGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCAACCGACGGATTGTTTTATCGGAGAAGTCGGCTTGACA
GGGGAGGTCCGCAGAGTATCAAGGATAGAACAGAGAGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTGGAAGGATGGACAAAGCCGAAAGGAATTGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

90.83

99.782

0.906
  radA Streptococcus mitis NCTC 12261

62.252

98.693

0.614
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61

Multiple sequence alignment