Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MKX80_RS00020 Genome accession   NZ_CP150260
Coordinates   3055..4167 (+) Length   370 a.a.
NCBI ID   WP_154996117.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0972     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX80_RS00005 (MKX80_00005) dnaA 1..1341 (+) 1341 WP_009330034.1 chromosomal replication initiator protein DnaA -
  MKX80_RS00010 (MKX80_00010) dnaN 1519..2655 (+) 1137 WP_026580417.1 DNA polymerase III subunit beta -
  MKX80_RS00015 (MKX80_00015) yaaA 2823..3038 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  MKX80_RS00020 (MKX80_00020) recF 3055..4167 (+) 1113 WP_154996117.1 DNA replication/repair protein RecF Machinery gene
  MKX80_RS00025 (MKX80_00025) - 4185..4427 (+) 243 WP_154996119.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  MKX80_RS00030 (MKX80_00030) gyrB 4487..6400 (+) 1914 WP_154996125.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MKX80_RS00035 (MKX80_00035) gyrA 6591..9065 (+) 2475 WP_234112506.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42496.36 Da        Isoelectric Point: 6.7332

>NTDB_id=968421 MKX80_RS00020 WP_154996117.1 3055..4167(+) (recF) [Bacillus sp. FSL K6-0972]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVEQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=968421 MKX80_RS00020 WP_154996117.1 3055..4167(+) (recF) [Bacillus sp. FSL K6-0972]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAATGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCC
GTTCCCATCCAGCTTGTTATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTTTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAGACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGAACAGCTTGAAAAATGGGCTCAGCCTATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGAGTATCTCTTTCAGGTCCCCATAG
GGATGATGTTCTTTTCTACGTCAATGGCCGTGATGTACAGACTTACGGATCGCAGGGCCAGCAGCGTACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACACTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886

Multiple sequence alignment