Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACK2VU_RS00065 Genome accession   NZ_CP176687
Coordinates   12807..13799 (+) Length   330 a.a.
NCBI ID   WP_000224460.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain GTVSS-023     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7807..18799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VU_RS00040 (ACK2VU_00040) rbsD 7931..8350 (+) 420 WP_001301979.1 D-ribose pyranase -
  ACK2VU_RS00045 (ACK2VU_00045) rbsA 8358..9863 (+) 1506 WP_000387782.1 ribose ABC transporter ATP-binding protein RbsA -
  ACK2VU_RS00050 (ACK2VU_00050) rbsC 9868..10833 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ACK2VU_RS00055 (ACK2VU_00055) rbsB 10858..11748 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACK2VU_RS00060 (ACK2VU_00060) rbsK 11874..12803 (+) 930 WP_001300603.1 ribokinase -
  ACK2VU_RS00065 (ACK2VU_00065) cytR 12807..13799 (+) 993 WP_000224460.1 ribose operon transcriptional repressor RbsR Regulator
  ACK2VU_RS00070 (ACK2VU_00070) mdtD 13765..15192 (-) 1428 WP_001280821.1 multidrug transporter subunit MdtD -
  ACK2VU_RS00075 (ACK2VU_00075) yieP 15215..15907 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36641.99 Da        Isoelectric Point: 5.2141

>NTDB_id=968418 ACK2VU_RS00065 WP_000224460.1 12807..13799(+) (cytR) [Escherichia coli O157:H7 strain GTVSS-023]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLAMQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=968418 ACK2VU_RS00065 WP_000224460.1 12807..13799(+) (cytR) [Escherichia coli O157:H7 strain GTVSS-023]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAATGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACGATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364