Detailed information NTG0968396

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACK2VH_RS22715
• Genome accession: NZ_CP176684
• Coordinates: 4956148..4957152 (-)
• Length: 334 a.a.
• NCBI ID: WP_003143264.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain GTVSS-024
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4951148..4962152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK2VH_RS22700 (ACK2VH_22695)	-	4951631..4952638 (+)	1008	WP_003098486.1	TolB family protein	-
ACK2VH_RS22705 (ACK2VH_22700)	mutS	4952764..4955331 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACK2VH_RS22710 (ACK2VH_22705)	fdxA	4955398..4955721 (+)	324	WP_003092272.1	ferredoxin FdxA	-
ACK2VH_RS22715 (ACK2VH_22710)	rpoS	4956148..4957152 (-)	1005	WP_003143264.1	RNA polymerase sigma factor RpoS	Regulator
ACK2VH_RS22720 (ACK2VH_22715)	-	4957257..4958150 (-)	894	WP_073663435.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACK2VH_RS22725 (ACK2VH_22720)	-	4958196..4958831 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACK2VH_RS22730 (ACK2VH_22725)	surE	4958864..4959613 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACK2VH_RS22735 (ACK2VH_22730)	truD	4959601..4960668 (-)	1068	WP_153655399.1	tRNA pseudouridine(13) synthase TruD	-
ACK2VH_RS22740 (ACK2VH_22735)	ispF	4960665..4961138 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACK2VH_RS22745 (ACK2VH_22740)	fghA	4961209..4962060 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38254.43 Da
• Isoelectric Point: 5.0507

>NTDB_id=968396 ACK2VH_RS22715 WP_003143264.1 4956148..4957152(-) (rpoS) [Pseudomonas aeruginosa strain GTVSS-024]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=968396 ACK2VH_RS22715 WP_003143264.1 4956148..4957152(-) (rpoS) [Pseudomonas aeruginosa strain GTVSS-024]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.381	83.234	0.611