Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   ACK2VH_RS19255 Genome accession   NZ_CP176684
Coordinates   4217950..4218306 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain GTVSS-024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4212950..4223306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VH_RS19235 (ACK2VH_19235) - 4214787..4214909 (-) 123 Protein_3791 radical SAM protein -
  ACK2VH_RS19240 (ACK2VH_19240) - 4215076..4215714 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  ACK2VH_RS19245 (ACK2VH_19245) - 4215800..4216933 (+) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  ACK2VH_RS19250 (ACK2VH_19250) - 4217159..4217935 (-) 777 WP_003091117.1 TatD family hydrolase -
  ACK2VH_RS19255 (ACK2VH_19255) pilZ 4217950..4218306 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  ACK2VH_RS19260 (ACK2VH_19260) - 4218340..4219326 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  ACK2VH_RS19265 (ACK2VH_19265) tmk 4219319..4219951 (-) 633 WP_003091125.1 dTMP kinase -
  ACK2VH_RS19270 (ACK2VH_19270) mltG 4219980..4221029 (-) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  ACK2VH_RS19275 (ACK2VH_19275) pabC 4221035..4221850 (-) 816 WP_003452483.1 aminodeoxychorismate lyase -
  ACK2VH_RS19280 (ACK2VH_19280) fabF 4221850..4223094 (-) 1245 WP_023088199.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=968384 ACK2VH_RS19255 WP_003091119.1 4217950..4218306(-) (pilZ) [Pseudomonas aeruginosa strain GTVSS-024]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=968384 ACK2VH_RS19255 WP_003091119.1 4217950..4218306(-) (pilZ) [Pseudomonas aeruginosa strain GTVSS-024]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449

Multiple sequence alignment