Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MKX38_RS13800 Genome accession   NZ_CP150258
Coordinates   2668171..2668917 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0025     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2663171..2673917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX38_RS13775 (MKX38_13775) mreC 2663577..2664449 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  MKX38_RS13780 (MKX38_13780) mreB 2664480..2665493 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  MKX38_RS13785 (MKX38_13785) radC 2665585..2666280 (-) 696 WP_015251546.1 DNA repair protein RadC -
  MKX38_RS13790 (MKX38_13790) - 2666317..2666886 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  MKX38_RS13795 (MKX38_13795) spoIIB 2667039..2668037 (-) 999 WP_003229644.1 stage II sporulation protein SpoIIB -
  MKX38_RS13800 (MKX38_13800) comC 2668171..2668917 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  MKX38_RS13805 (MKX38_13805) - 2669057..2670349 (-) 1293 WP_339187426.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MKX38_RS13810 (MKX38_13810) valS 2670409..2673051 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  MKX38_RS13815 (MKX38_13815) - 2673499..2673690 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=968325 MKX38_RS13800 WP_072592551.1 2668171..2668917(-) (comC) [Bacillus sp. FSL M8-0025]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=968325 MKX38_RS13800 WP_072592551.1 2668171..2668917(-) (comC) [Bacillus sp. FSL M8-0025]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment