Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MKX38_RS12415 Genome accession   NZ_CP150258
Coordinates   2424236..2425003 (-) Length   255 a.a.
NCBI ID   WP_339187270.1    Uniprot ID   -
Organism   Bacillus sp. FSL M8-0025     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2419236..2430003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKX38_RS12395 (MKX38_12395) - 2419411..2420223 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  MKX38_RS12400 (MKX38_12400) ccpN 2420249..2420887 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  MKX38_RS12405 (MKX38_12405) glyS 2421020..2423059 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  MKX38_RS12410 (MKX38_12410) glyQ 2423052..2423939 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  MKX38_RS12415 (MKX38_12415) recO 2424236..2425003 (-) 768 WP_339187270.1 DNA repair protein RecO Machinery gene
  MKX38_RS12420 (MKX38_12420) - 2425040..2425183 (-) 144 WP_003230053.1 YqzL family protein -
  MKX38_RS12425 (MKX38_12425) era 2425331..2426236 (-) 906 WP_003230051.1 GTPase Era -
  MKX38_RS12430 (MKX38_12430) - 2426217..2426627 (-) 411 WP_003230049.1 cytidine deaminase -
  MKX38_RS12435 (MKX38_12435) - 2426746..2427117 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  MKX38_RS12440 (MKX38_12440) ybeY 2427098..2427571 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  MKX38_RS12445 (MKX38_12445) pgpH 2427572..2429707 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29309.99 Da        Isoelectric Point: 8.3080

>NTDB_id=968317 MKX38_RS12415 WP_339187270.1 2424236..2425003(-) (recO) [Bacillus sp. FSL M8-0025]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLVQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=968317 MKX38_RS12415 WP_339187270.1 2424236..2425003(-) (recO) [Bacillus sp. FSL M8-0025]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAGTGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGGACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGAAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment