Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OO774_RS19660 Genome accession   NZ_AP026764
Coordinates   883590..884687 (+) Length   365 a.a.
NCBI ID   WP_264908571.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 878590..889687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS19635 (VspSTUT11_37500) - 879800..881137 (-) 1338 WP_264908563.1 MATE family efflux transporter -
  OO774_RS19640 (VspSTUT11_37510) - 881270..881584 (-) 315 WP_264908565.1 DUF496 family protein -
  OO774_RS19645 (VspSTUT11_37520) - 881965..882180 (+) 216 WP_264908659.1 hypothetical protein -
  OO774_RS19650 (VspSTUT11_37530) - 882338..882982 (+) 645 WP_264908566.1 YceH family protein -
  OO774_RS19655 (VspSTUT11_37540) - 882982..883311 (+) 330 WP_264908568.1 GIY-YIG nuclease family protein -
  OO774_RS19660 (VspSTUT11_37550) luxP 883590..884687 (+) 1098 WP_264908571.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OO774_RS19665 (VspSTUT11_37560) luxQ 884687..887254 (+) 2568 WP_264908573.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OO774_RS19670 (VspSTUT11_37570) - 887437..887892 (+) 456 WP_264908660.1 MarR family transcriptional regulator -
  OO774_RS19675 (VspSTUT11_37580) - 887926..888984 (+) 1059 WP_264908574.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41694.97 Da        Isoelectric Point: 5.4917

>NTDB_id=96830 OO774_RS19660 WP_264908571.1 883590..884687(+) (luxP) [Vibrio sp. STUT-A11]
MKKELIFSLVLMIGISPASHASQVLNGYWEYQEFLDEFPEQKQLTNALAEAVRENPKPITSEKKRELKISVVYPGQQISD
YWIRNIDAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFIEHVLDSKKTKLILQNI
TTPVRDWNNHQPFLYVGFDHAEGSRKLAQEFSQRFPKHSHYSVLYFSEGYISDVRGNTFINQVNRDSNFELQSAYYTKAT
KQSGYEAAKASLDKYPDVDFIYACSTDVALGAVEALAELGRDDIMINGWGGGSAELDAILNGELDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDYEVVTTSDSPKRIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=96830 OO774_RS19660 WP_264908571.1 883590..884687(+) (luxP) [Vibrio sp. STUT-A11]
ATGAAAAAAGAGTTAATATTCTCCCTCGTTTTAATGATTGGTATTTCCCCTGCATCACATGCTTCGCAAGTGTTGAATGG
GTATTGGGAATATCAAGAGTTTCTCGATGAATTCCCCGAGCAAAAGCAGCTAACCAATGCGCTGGCTGAAGCTGTCAGAG
AAAACCCGAAACCGATTACTAGCGAGAAAAAGCGTGAACTGAAAATTTCTGTGGTTTACCCGGGGCAGCAAATTTCAGAT
TACTGGATCAGAAATATTGATGCGTTTGAAAAACGGTTAGACAAGCTGAATATTAACTATCAGCTCAATCAGGTTTTTAC
TCGTCCAAACGCCGATATTAAACAGCAGAGTCTCTCTCTAATGGAGGCTTTGAAAAGCAACTCGGACTATCTCATATTTA
CTCTCGATACTACCAGACATCGTAAGTTTATCGAGCATGTATTGGATTCGAAAAAAACCAAATTGATCTTACAAAACATT
ACGACACCGGTAAGAGATTGGAATAATCACCAGCCGTTTCTTTATGTTGGTTTTGATCACGCAGAAGGCAGCAGAAAATT
GGCGCAAGAGTTTAGCCAACGCTTCCCCAAACACAGCCACTACAGCGTGCTTTATTTTTCAGAAGGCTACATTAGTGATG
TGAGAGGGAATACATTTATTAACCAGGTAAACCGTGACAGCAACTTTGAGCTACAATCTGCATATTACACCAAGGCGACA
AAGCAGTCTGGGTATGAGGCGGCAAAAGCCAGTCTGGACAAGTACCCTGATGTCGATTTTATTTATGCTTGCTCAACAGA
CGTCGCTCTTGGTGCCGTTGAAGCGCTAGCAGAACTCGGGCGCGATGATATTATGATTAATGGTTGGGGAGGGGGCTCTG
CAGAGCTAGACGCCATTTTAAATGGAGAGTTGGATATAACCGTCATGCGTATGAACGACGATACAGGTATTGCGATGGCA
GAAGCCATAAAGTGGGATTTGGAAGGGAAGTCAGTACCAACCGTATATTCTGGTGACTATGAAGTCGTCACCACATCTGA
TTCTCCTAAAAGAATAGAAGCCTTAAGAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment